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Updated: May 20, 2026

Determining 3'-Termini and Sequences of Nascent Single-Stranded Viral DNA Molecules during HIV-1 Reverse Transcription in Infected Cells
Published on: January 30, 2019
Small terminase couples viral DNA binding to genome-packaging ATPase activity
Ankoor Roy1, Anshul Bhardwaj, Pinaki Datta
1Department of Biochemistry and Molecular Biology, Thomas Jefferson University, 233 South 10th Street, Philadelphia, PA 19107, USA.
The bacteriophage P22 small terminase structure reveals a channel for DNA. This DNA-binding activates the large terminase, ensuring specific viral genome packaging.
Area of Science:
- Virology
- Structural Biology
- Molecular Biology
Background:
- Viral genome packaging relies on DNA-packaging motors.
- These motors typically consist of large (L) and small (S) terminase subunits and portal proteins.
Purpose of the Study:
- To elucidate the structure of the bacteriophage P22 small terminase.
- To understand the mechanism of viral DNA packaging and terminase activation.
Main Methods:
- X-ray crystallography (1.75 Å resolution) to determine the S-terminase structure.
- Biochemical assays to assess DNA binding and ATPase activity.
Main Results:
- The 1.75 Å crystal structure of bacteriophage P22 S-terminase in a nonameric conformation was determined.
- A central channel approximately 23 Å in diameter, suitable for hydrated B-DNA, was observed.
- The C-terminal 23 residues of S-terminase are crucial for DNA binding and L-terminase assembly.
- DNA binding to S-terminase specifically activates L-terminase ATPase activity.
Conclusions:
- The structure provides insights into the DNA-packaging motor's architecture.
- DNA-dependent activation of L-terminase ensures specific packaging of viral DNA.
- This mechanism prevents packaging of host DNA and wasteful ATP hydrolysis, maintaining packaging fidelity.
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