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Related Concept Videos

Anatomical Terminology01:20

Anatomical Terminology

Knowledge of anatomy is essential to understand human biology and medicine. Anatomists and health care professionals use standard terminology to describe the human body with more precision and no ambiguity. Anatomical terms have mostly Greek and Latin-derived roots. Because these languages are rarely used in conversation, the meaning of words remains the same. Each term is made up of a root in between the prefixes and suffixes. The root of a term often refers to an organ, tissue, or condition,...
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Conjugate Addition to α,β-Unsaturated Carbonyl Compounds

α,β-Unsaturated carbonyl compounds are molecules bearing a carbonyl and alkene functionality in conjugation with each other. The conjugation in the molecule leads to three resonance structures. The hybrid form exhibits two probable electrophilic sites: the carbonyl carbon and the β carbon.
Cerebrum: Anatomical Overview I01:26

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The main and largest component of the human brain is the cerebrum. The cerebrum consists of two main parts: the cerebral cortex, an outer layer with wrinkles or folds known as gyri and shallow grooves called sulci, and a deeper region beneath it. The cerebrum divides into two distinct hemispheres and contains five different lobes: the frontal, parietal, temporal, occipital, and insula. The central sulcus separates the frontal and parietal lobes and two functionally important gyri — the...

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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts

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Concept annotation in the CRAFT corpus.

Michael Bada1, Miriam Eckert, Donald Evans

  • 1Department of Pharmacology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA. mike.bada@ucdenver.edu

BMC Bioinformatics
|July 11, 2012
PubMed
Summary
This summary is machine-generated.

The Colorado Richly Annotated Full-Text (CRAFT) Corpus offers extensive biomedical concept annotations for natural language processing (NLP) research. This large, gold-standard resource aids in advancing automated biomedical text mining and concept identification.

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Area of Science:

  • Biomedical Natural Language Processing (NLP)
  • Bioinformatics
  • Computational Biology

Background:

  • Manually annotated corpora are essential for training and evaluating automated methods in biomedical text analysis.
  • Developing robust NLP tools requires high-quality, comprehensive annotated datasets.

Purpose of the Study:

  • To present the concept annotations of the Colorado Richly Annotated Full-Text (CRAFT) Corpus.
  • To provide a valuable research resource for the biomedical NLP community.
  • To facilitate advancements in automated biomedical concept identification.

Main Methods:

  • Annotation of 97 full-length biomedical journal articles, covering semantic and syntactic information.
  • Identification of concepts from nine prominent biomedical ontologies and terminologies.
  • Development of a single set of annotation guidelines to ensure high interannotator agreement.

Main Results:

  • The CRAFT Corpus contains over 560,000 tokens in its initial 67-article release, with nearly 100,000 concept annotations.
  • The corpus includes diverse biomedical disciplines and is annotated in its entirety.
  • Achieved consistently high interannotator agreement during the annotation process.

Conclusions:

  • The CRAFT Corpus is among the largest gold-standard annotated biomedical corpora available.
  • Its extensive conceptual markup and diverse content significantly advance biomedical text mining.
  • The corpus, guidelines, and resources are publicly accessible for research use.