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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
An Overview of the CRAFT Concept Annotation Guidelines
Michael Bada1, Lawrence E Hunter1, Miriam Eckert2
1University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Abstract:
We present our concept-annotation guidelines for an large multi-institutional effort to create a gold-standard manually annotated corpus of full-text biomedical journal articles. We are semantically annotating these documents with the full term sets of eight large biomedical ontologies and controlled terminologies ranging from approximately 1,000 to millions of terms, and, using these guidelines, we have been able to perform this extremely challenging task with a high degree of interannotator agreement. The guidelines have been designed to be able to be used with any terminology employed to semantically annotate concept mentions in text and are available for external use.
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