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Updated: May 20, 2026

Enhanced Crosslinking Immunoprecipitation (eCLIP) Method for Efficient Identification of Protein-bound RNA in Mouse Testis
Published on: May 10, 2019
Cold-inducible RNA-binding protein (CIRP) regulates target mRNA stabilization in the mouse testis
Zhiping Xia1, Xinmin Zheng, Hang Zheng
1Department of Urology, Zhongnan Hospital of Wuhan University, Wuhan 430071, PR China.
Abstract:
Cold-inducible RNA-binding protein (CIRP) is an RNA-binding protein that is expressed in normal testis and down-regulated after heat stress. Recent studies suggest that CIRP contributes to male fertility problems but the mechanisms are unclear. The purpose of this study was to identify the likely mechanism of CIRP in reproduction. Based on the RNA-Binding Protein Immunoprecipitation-Microarray (Chip) Profiling (RIP-Chip) and biotin pull-down assays, we found that the mRNAs binding with CIRP in testis were mostly associated with translation regulator activity, antioxidant activity, envelope and reproduction, including important mRNAs related to male infertility. We also discovered that (Un)(n ≥2) was the possible core recognition sequence, and the binding mRNAs increased their stabilization. Our results improve our understanding of the mechanism by which heat stress causes male infertility.
Insights
Cold-inducible RNA-binding protein (CIRP) is linked to male infertility. CIRP binds to mRNAs involved in reproduction, potentially explaining how heat stress impairs male fertility.
Area of Science:
- Reproductive biology
- Molecular biology
- Biochemistry
Background:
- Cold-inducible RNA-binding protein (CIRP) is vital in the testis but decreases with heat stress.
- CIRP's role in male infertility is suspected but not fully understood.
- Understanding CIRP's mechanism is crucial for addressing heat-induced male reproductive issues.
Purpose of the Study:
- To elucidate the mechanism by which CIRP influences male reproduction.
- To identify specific mRNAs regulated by CIRP in the testis.
Main Methods:
- RNA-Binding Protein Immunoprecipitation-Microarray (RIP-Chip) assays.
- Biotin pull-down assays to identify CIRP-binding mRNAs.
- Analysis of mRNA targets and their functions.
Main Results:
- CIRP binds to mRNAs critical for translation regulation, antioxidant activity, and reproduction.
- Identified mRNAs are associated with male infertility.
- The (Un)(n ≥2) sequence is a potential core recognition site for CIRP.
- CIRP binding enhances the stabilization of its target mRNAs.
Conclusions:
- CIRP plays a significant role in male reproductive function.
- CIRP-mediated mRNA stabilization is a key mechanism affected by heat stress.
- This study enhances understanding of heat stress-induced male infertility.
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