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Related Concept Videos

RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Base Excision Repair01:54

Base Excision Repair

One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
Base Excision Repair01:54

Base Excision Repair

One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...

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Silencing of BRCA2 to Identify Novel BRCA2-regulated Biological Functions in Cultured Human Cells
09:24

Silencing of BRCA2 to Identify Novel BRCA2-regulated Biological Functions in Cultured Human Cells

Published on: August 12, 2015

Hidden dangers: a cryptic exon disrupts BRCA2 mRNA.

James D Fackenthal1, Younghee Lee, Olufunmilayo I Olopade

  • 1Center for Clinical Cancer Genetics and Global Health, The University of Chicago Medical Center, Chicago, IL 60637, USA.

Clinical Cancer Research : an Official Journal of the American Association for Cancer Research
|August 8, 2012
PubMed
Summary

A novel mutation disrupting BRCA2 mRNA by adding a cryptic exon was discovered deep within an intron. This finding, missed by conventional methods, highlights the importance of direct mRNA analysis for detecting complex genetic mutations.

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Identifying the Effects of BRCA1 Mutations on Homologous Recombination using Cells that Express Endogenous Wild-type BRCA1
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Functional Assessment of BRCA1 variants using CRISPR-Mediated Base Editors

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Area of Science:

  • Genetics
  • Molecular Biology
  • Cancer Research

Background:

  • BRCA2 gene mutations are linked to various cancers.
  • Conventional screening methods primarily focus on coding regions and known splice sites.
  • Intronic mutations can lead to aberrant mRNA splicing and protein dysfunction but are often overlooked.

Purpose of the Study:

  • To report the discovery of a novel mutation affecting BRCA2 mRNA.
  • To characterize a mutation located within an intron that creates a cryptic exon.
  • To emphasize the limitations of conventional screening for detecting such mutations.

Main Methods:

  • Direct analysis of BRCA2 messenger RNA (mRNA).
  • Identification of a novel cryptic exon inclusion event.
  • Mutation analysis within intronic sequences.

Main Results:

  • A mutation deep within an intron was identified as the cause of a novel cryptic exon inclusion in BRCA2 mRNA.
  • This specific intronic mutation would not be detectable by standard genetic screening approaches.
  • The inclusion of the cryptic exon leads to disruption of the BRCA2 messenger RNA.

Conclusions:

  • Direct mRNA analysis is crucial for uncovering complex mutations.
  • Intronic mutations, particularly those creating cryptic exons, represent an underappreciated source of genetic alterations.
  • Future genetic screening strategies should incorporate mRNA analysis to enhance mutation detection rates for diseases like cancer.