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Updated: May 19, 2026

Quantitative Magnetic Resonance Imaging of Skeletal Muscle Disease
Published on: December 18, 2016
Optimized quantitative magnetic resonance spectroscopy for clinical routine.
Olivier Scheidegger1, Kevin Wingeier, Dan Stefan
1Support Center for Advanced Neuroimaging, Institute for Diagnostic and Interventional Neuroradiology, Inselspital, Berne University Hospital, University of Berne, Switzerland.
Quantitative localized magnetic resonance spectroscopy (qMRS) is now more accessible for clinical use. New software and protocols simplify data handling, enabling routine clinical application for brain metabolite analysis.
Area of Science:
- Medical Imaging
- Neuroimaging
- Biophysics
Background:
- Clinical adoption of quantitative localized magnetic resonance spectroscopy (qMRS) is hindered by practical challenges in data handling and evaluation.
- Existing methods lack seamless integration into routine Magnetic Resonance (MR) examinations.
Purpose of the Study:
- To develop and implement a clinically feasible MR pulse sequence protocol and software enhancements for routine qMRS.
- To streamline data transfer, visualization, reporting, and quantification for qMRS.
Main Methods:
- Implemented a new MR pulse sequence protocol for qMRS compatible with standard MR systems.
- Enhanced the jMRUI-v5.0 software with functionalities for DICOM data transfer, combined spectroscopy/imaging visualization, DICOM reporting, advanced water reference models, and metabolite concentration databases.
- Acquired spectroscopic data from 55 healthy subjects (age 6-61) using 1.5T and 3T MR systems to create normal metabolite concentration databases.
- Demonstrated the workflow with a clinical case of a primitive neuroectodermal tumor.
Main Results:
- Established a workflow for easy and fast DICOM data transfer and network transfer of spectroscopy reports.
- Enabled visualization of combined MR spectroscopy and imaging.
- Integrated advanced water reference models for absolute quantification.
- Created databases of normal metabolite concentrations in brain tissue for different age groups.
- Successfully applied the workflow in a clinical case of a brain tumor.
Conclusions:
- The developed MR pulse sequence protocol and jMRUI software functionalities significantly improve the clinical feasibility of qMRS.
- These advancements facilitate the routine incorporation of qMRS and reference metabolite concentration data into daily clinical practice.
- This work paves the way for broader clinical application of qMRS in neurological examinations.
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