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Updated: May 19, 2026

Qualitative and Quantitative Analysis of Siderophore Production from Pseudomonas aeruginosa
Published on: March 15, 2024
Microcolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate
Olga E Petrova1, Jill R Schurr, Michael J Schurr
1Department of Biological Sciences, Binghamton University, Binghamton, NY 13902, USA.
Abstract:
A hallmark of the biofilm architecture is the presence of microcolonies. However, little is known about the underlying mechanisms governing microcolony formation. In the pathogen Pseudomonas aeruginosa, microcolony formation is dependent on the two-component regulator MifR, with mifR mutant biofilms exhibiting an overall thin structure lacking microcolonies, and overexpression of mifR resulting in hyper-microcolony formation. Using global transcriptomic and proteomic approaches, we demonstrate that microcolony formation is associated with stressful, oxygen-limiting but electron-rich conditions, as indicated by the activation of stress response mechanisms and anaerobic and fermentative processes, in particular pyruvate fermentation. Inactivation of genes involved in pyruvate utilization including uspK, acnA and ldhA abrogated microcolony formation in a manner similar to mifR inactivation. Moreover, depletion of pyruvate from the growth medium impaired biofilm and microcolony formation, while addition of pyruvate significantly increased microcolony formation. Addition of pyruvate to or expression of mifR in lactate dehydrogenase (ldhA) mutant biofilms did not restore microcolony formation, while addition of pyruvate partly restored microcolony formation in mifR mutant biofilms. In contrast, expression of ldhA in mifR::Mar fully restored microcolony formation by this mutant strain. Our findings indicate the fermentative utilization of pyruvate to be a microcolony-specific adaptation of the P. aeruginosa biofilm environment.
Insights
Microcolony formation in Pseudomonas aeruginosa biofilms is linked to pyruvate fermentation under stressful, oxygen-limited conditions. This process is regulated by MifR and involves specific pyruvate utilization genes.
Area of Science:
- Microbiology
- Bacterial Pathogenesis
- Biofilm Formation
Background:
- Biofilm architecture is characterized by microcolonies, but the mechanisms driving their formation are poorly understood.
- The two-component regulator MifR is crucial for microcolony development in the pathogen Pseudomonas aeruginosa.
Purpose of the Study:
- To elucidate the molecular mechanisms underlying microcolony formation in Pseudomonas aeruginosa biofilms.
- To investigate the role of pyruvate metabolism in P. aeruginosa biofilm development and microcolony architecture.
Main Methods:
- Global transcriptomic and proteomic analyses to identify molecular changes associated with microcolony formation.
- Genetic manipulation of key metabolic genes (uspK, acnA, ldhA) and the regulator MifR.
- Assessment of biofilm formation and microcolony development under varying pyruvate concentrations.
Main Results:
- Microcolony formation correlates with stressful, oxygen-limiting conditions, activating stress responses and anaerobic fermentation, particularly pyruvate fermentation.
- Inactivation of pyruvate utilization genes (uspK, acnA, ldhA) phenocopies mifR mutants, impairing microcolony formation.
- Pyruvate availability directly influences biofilm and microcolony formation; its depletion inhibits, while addition enhances it.
- While pyruvate addition partially rescues mifR mutants, expressing ldhA fully restores microcolony formation in mifR mutants, highlighting the role of lactate dehydrogenase.
Conclusions:
- The fermentative utilization of pyruvate is a key adaptation specific to microcolony formation within the P. aeruginosa biofilm environment.
- MifR regulates microcolony formation, likely by influencing pyruvate metabolism and the expression of genes involved in anaerobic respiration and fermentation.
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