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Updated: May 19, 2026

Combined DNA-RNA Fluorescent In situ Hybridization (FISH) to Study X Chromosome Inactivation in Differentiated Female Mouse Embryonic Stem Cells
Published on: June 14, 2014
X-chromosome inactivation in monkey embryos and pluripotent stem cells
Masahito Tachibana1, Hong Ma, Michelle L Sparman
1Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, USA.
Female primate embryonic stem cells (ESCs) show non-random X chromosome inactivation (XCI), but ex vivo inner cell mass cells retain two active X chromosomes. Primate trophectoderm does not support paternal XCI, unlike in mice.
Area of Science:
- Epigenetics
- Developmental Biology
- Genetics
Background:
- Mammalian females (XX) inactivate one X chromosome to balance gene dosage with males (XY).
- Pluripotent cells like mouse embryonic stem cells (ESCs) and inner cell mass (ICM) initially have two active X chromosomes (XaXa).
- X chromosome inactivation (XCI) in mice occurs randomly after implantation or ESC differentiation, creating mosaic tissues.
Purpose of the Study:
- To investigate X chromosome inactivation (XCI) patterns in rhesus monkey ESCs and early embryonic tissues.
- To compare XCI in primate pluripotent cells with established patterns in mice.
- To understand species-specific differences in XCI during primate development and in vitro culture.
Main Methods:
- Analysis of X-linked gene expression and methylation in rhesus monkey ESCs.
- Examination of XIST and other X-linked gene expression in isolated female monkey ICMs.
- Investigation of X-linked gene expression in preimplantation monkey trophectoderm (TE).
Main Results:
- Rhesus monkey ESCs exhibit monoallelic expression and methylation, consistent with non-random XCI.
- Isolated female monkey ICMs express X-linked genes from both X chromosomes, indicating retained XaXa status.
- Primate trophectoderm (TE) expresses X-linked genes from both alleles, suggesting no imprinted paternal XCI, contrasting with mice.
Conclusions:
- Rhesus monkey ESCs display non-random XCI, similar to human ESCs.
- Ex vivo primate pluripotent cells (ICMs) maintain two active X chromosomes.
- Primate trophectoderm lineage does not undergo imprinted paternal XCI, highlighting species-specific epigenetic regulation.
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