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Real Time RT-PCR02:57

Real Time RT-PCR

Real-time reverse transcription-polymerase chain reaction, or Real-time RT-PCR, is an analytical tool used to determine the expression level of target genes. The method involves converting mRNA to complementary DNA with the help of an enzyme known as reverse transcriptase, followed by the PCR amplification of the cDNA. These two processes can be performed simultaneously in a single tube or separately as a two-step reaction.
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DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
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DNA isolation protocols can be fast and straightforward or complex and time-consuming depending on the type and quality of DNA required for further processing. For example, plasmid DNA extraction is a bit more complicated than genomic DNA extraction because of the need for an appropriate lysis method to separate plasmid DNA from gDNA during isolation. However, for specific applications, such as long-range DNA sequencing that require a good yield of high- quality DNA samples, we need to follow...

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Related Experiment Video

Updated: May 19, 2026

A Droplet-Based Microfluidic Approach and Microsphere-PCR Amplification for Single-Stranded DNA Amplicons
11:40

A Droplet-Based Microfluidic Approach and Microsphere-PCR Amplification for Single-Stranded DNA Amplicons

Published on: November 14, 2018

Quantitative amplification of single-stranded DNA.

Eva-Maria Holstein1, David Lydall

  • 1Institute for Cell and Molecular Biosciences, Newcastle University, Medical School, Newcastle upon Tyne, UK.

Methods in Molecular Biology (Clifton, N.J.)
|September 4, 2012
PubMed
Summary
This summary is machine-generated.

Single-stranded DNA (ssDNA) is crucial for DNA replication and repair. Quantitative amplification of ssDNA (QAOS) measures ssDNA in genomes, aiding research into DNA processing and protein roles.

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Last Updated: May 19, 2026

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Area of Science:

  • Molecular Biology
  • Genetics
  • Biochemistry

Background:

  • Single-stranded DNA (ssDNA) intermediates are vital in fundamental cellular processes.
  • These processes include DNA replication, homologous recombination, DNA damage responses, and DNA repair.

Purpose of the Study:

  • To introduce and validate a method for quantifying ssDNA in complex genomes.
  • To enable detailed investigation of cellular processes involving ssDNA.

Main Methods:

  • Quantitative amplification of ssDNA (QAOS) was employed.
  • The method allows for quantification at numerous single-copy and repetitive loci.

Main Results:

  • QAOS successfully quantifies ssDNA across various genomic locations.
  • The technique provides insights into ssDNA dynamics during cellular activities.

Conclusions:

  • QAOS is an effective tool for studying ssDNA.
  • It facilitates understanding the regulation of ssDNA production and cellular responses to ssDNA.