Related Experiment Video
Updated: May 18, 2026

06:42
Real-Time In Vitro Migration Assay for Primary Murine CD8+ T Cells
Published on: May 24, 2024
Developmental heterogeneity in DNA packaging patterns influences T-cell activation and transmigration
Soumya Gupta1, Nimi Marcel, Shefali Talwar
1National Centre for Biological Sciences, Tata Institute for Fundamental Research, Bangalore, Karnataka, India.
Plos One
|September 8, 2012
Summary
T-cell development shows varied DNA organization patterns, impacting cell function and movement. This chromatin reorganization is key to T-cell plasticity during development and activation.
Area of Science:
- Immunology
- Cell Biology
- Biophysics
Background:
- Cellular differentiation involves significant changes in nuclear organization and gene expression.
- The role of chromatin assembly transitions in T-cell development and function remains unclear.
Purpose of the Study:
- To map structural changes in chromatin organization during murine T-cell development.
- To understand the functional implications of chromatin heterogeneity in T-cell lineage.
Main Methods:
- Confocal imaging of DNA organization in T-cells from bone marrow, thymus, and spleen.
- In vitro mechanical pliability assays and in vivo transmigration assays.
- Analysis of CD69 expression and nuclear size changes upon T-cell activation.
Main Results:
- Immature T-cells exhibit a central DNA pattern, while mature T-cells show heterogeneous central and peripheral patterns.
- Naïve T-cells with central DNA patterns display increased mechanical pliability and faster CD69 expression.
- T-cell activation leads to a shift towards a central DNA pattern, increased nuclear size, and chromatin reorganization upon quiescence.
Conclusions:
- T-cell development and differentiation involve dynamic chromatin reorganization, contributing to nuclear plasticity.
- Heterogeneous DNA organization patterns correlate with distinct functional properties in T-cells.
- Internal regulatory mechanisms govern chromatin reorganization during T-cell activation and quiescence.
Related Concept Videos
DNA Packaging
Overview
DNA Packaging
Overview
T Cell Activation and Clonal Selection
T cells are integral to our adaptive immune system, recognizing and effectively responding to foreign antigens. T cell activation and clonal selection are pivotal in orchestrating this immune response. This article elucidates these mechanisms, detailing the roles of cluster of differentiation (CD) markers, major histocompatibility complex (MHC) molecules, costimulatory signals, and the process of clonal selection.
Naive T cells that have not yet encountered an antigen express two primary CD...
Naive T cells that have not yet encountered an antigen express two primary CD...
Position-effect Variegation
In 1928, a German botanist Emil Heitz observed the moss nuclei with a DNA binding dye. He observed that while some chromatin regions decondense and spread out in the interphase nucleus, others do not. He termed them euchromatin and heterochromatin, respectively. He proposed that the heterochromatin regions reflect a functionally inactive state of the genome. It was later confirmed that heterochromatin is transcriptionally repressed, and euchromatin is transcriptionally active chromatin.
Chromatin Packaging
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...
Chromatin Packaging
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter?
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.

