Related Experiment Video
Updated: May 18, 2026

Quantifying Replication Stress in Ovarian Cancer Cells Using Single-Stranded DNA Immunofluorescence
Published on: February 10, 2023
Distinct roles for DNA-PK, ATM and ATR in RPA phosphorylation and checkpoint activation in response to replication
Shengqin Liu1, Stephen O Opiyo, Karoline Manthey
1Department of Oral Biology, University of Nebraska Medical Center, Omaha, NE 68583, USA.
Abstract:
DNA damage encountered by DNA replication forks poses risks of genome destabilization, a precursor to carcinogenesis. Damage checkpoint systems cause cell cycle arrest, promote repair and induce programed cell death when damage is severe. Checkpoints are critical parts of the DNA damage response network that act to suppress cancer. DNA damage and perturbation of replication machinery causes replication stress, characterized by accumulation of single-stranded DNA bound by replication protein A (RPA), which triggers activation of ataxia telangiectasia and Rad3 related (ATR) and phosphorylation of the RPA32, subunit of RPA, leading to Chk1 activation and arrest. DNA-dependent protein kinase catalytic subunit (DNA-PKcs) [a kinase related to ataxia telangiectasia mutated (ATM) and ATR] has well characterized roles in DNA double-strand break repair, but poorly understood roles in replication stress-induced RPA phosphorylation. We show that DNA-PKcs mutant cells fail to arrest replication following stress, and mutations in RPA32 phosphorylation sites targeted by DNA-PKcs increase the proportion of cells in mitosis, impair ATR signaling to Chk1 and confer a G2/M arrest defect. Inhibition of ATR and DNA-PK (but not ATM), mimic the defects observed in cells expressing mutant RPA32. Cells expressing mutant RPA32 or DNA-PKcs show sustained H2AX phosphorylation in response to replication stress that persists in cells entering mitosis, indicating inappropriate mitotic entry with unrepaired damage.
Insights
DNA-PKcs is crucial for preventing genome instability during replication stress. Its absence or mutation leads to cell cycle defects and mitotic entry with unrepaired DNA damage, increasing cancer risk.
Area of Science:
- Molecular Biology
- Cell Biology
- Cancer Research
Background:
- DNA damage at replication forks can lead to genome instability and cancer.
- DNA damage checkpoint systems are critical for suppressing cancer by arresting the cell cycle, promoting repair, or inducing cell death.
- Replication stress, caused by DNA damage or replication machinery perturbation, activates signaling pathways like ATR-Chk1, involving RPA phosphorylation.
Purpose of the Study:
- To investigate the role of DNA-dependent protein kinase catalytic subunit (DNA-PKcs) in replication stress-induced RPA phosphorylation.
- To understand the consequences of impaired DNA-PKcs function on cell cycle control and DNA damage response.
Main Methods:
- Utilized DNA-PKcs mutant cells and cells with mutations in RPA32 phosphorylation sites.
- Assessed cell cycle arrest, ATR signaling to Chk1, and H2AX phosphorylation.
- Inhibited ATR and DNA-PK (but not ATM) to mimic observed defects.
Main Results:
- DNA-PKcs mutant cells failed to arrest replication following stress.
- Mutations in RPA32 phosphorylation sites impaired ATR signaling and caused a G2/M arrest defect.
- Inhibition of ATR and DNA-PK mimicked these defects.
- Cells with mutant RPA32 or DNA-PKcs showed sustained H2AX phosphorylation, indicating entry into mitosis with unrepaired damage.
Conclusions:
- DNA-PKcs plays a significant role in replication stress response by regulating RPA phosphorylation.
- Impaired DNA-PKcs function or RPA32 phosphorylation leads to defective cell cycle arrest and inappropriate mitotic entry with unrepaired DNA.
- These findings highlight a novel mechanism by which DNA-PKcs contributes to genome stability and cancer suppression.
Related Concept Videos
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle
Restarting Stalled Replication Forks
The DNA Replication Fork
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.

