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Updated: May 18, 2026

Adapting Gastrointestinal Organoids for Pathogen Infection and Single Cell Sequencing under Biosafety Level 3 (BSL-3) Conditions
Published on: September 10, 2021
Human bocavirus 1 and 3 infection in children with acute gastroenteritis in Brazil
Teresinha Teixeira de Sousa1, Menira Souza, Fabíola Souza Fiaccadori
1Laboratório de Virologia Humana, Instituto de Patologia Tropical e Saúde Pública, Goiânia, GO, Brasil.
Insights
Human bocavirus (HBoV) 1 and 3 were detected in 5.8% of children with acute gastroenteritis in Brazil. Co-infections with other viruses were common, highlighting HBoV
Area of Science:
- Virology
- Pediatrics
- Epidemiology
Background:
- Human bocavirus (HBoV) is an emerging pathogen implicated in respiratory and gastrointestinal infections in children.
- Limited data exists on HBoV prevalence in South America, particularly in Brazil.
- Understanding HBoV epidemiology is crucial for diagnosing and managing pediatric gastroenteritis.
Purpose of the Study:
- To determine the prevalence of human bocavirus (HBoV) types 1 and 3 in children with acute gastroenteritis in Brazil's Central-West Region.
- To characterize the genetic diversity and phylogenetic relationships of detected HBoV strains.
- To investigate co-infections with other common enteric viruses.
Main Methods:
- Retrospective analysis of 762 fecal samples from children with acute gastroenteritis (1994-2004).
- Polymerase chain reaction (PCR) using primers for the NS1 gene of HBoV-1 and HBoV-3.
- Genomic sequencing and phylogenetic analysis of positive samples.
Main Results:
- HBoV-1 or HBoV-3 DNA was detected in 5.8% (44/762) of fecal samples.
- Co-infection was observed in 31.8% (14/44) of HBoV-positive samples, with Rotavirus A and Aichi virus being common.
- Phylogenetic analysis revealed high sequence homology of HBoV-1 strains with those found globally, including Brazil.
Conclusions:
- HBoV-1 and HBoV-3 are present in children with acute gastroenteritis in Brazil's Central-West Region.
- Co-infections with other enteric viruses are frequent, suggesting complex etiologies for pediatric gastroenteritis.
- Further research is needed to elucidate the etiological role of HBoVs in gastroenteritis.
Abstract:
To determine the positivity rate of human bocavirus (HBoV) 1 and 3 among children who presented with acute gastroenteritis symptoms during the period of 1994-2004 in the Central-West Region of Brazil, 762 faecal samples were tested using polymerase chain reaction (PCR) for the detection of HBoV DNA. Primers for a segment of the non-structural viral protein 1 (NS1) gene of HBoV-1 and HBoV-3 were used. Twelve HBoV-positive samples were further characterised via genomic sequencing and phylogenetic analysis. Of the samples tested, 5.8% (n = 44) were positive for HBoV-1 or HBoV-3 and co-infection was observed in 14 (31.8%) of the 44 HBoV-positive samples. Nine of the 14 samples were also positive for Rotavirus A and five were positive for Aichi virus. The genomic sequencing of the NS1 partial sequence of 12 HBoV-samples showed that 11 samples were characterised as HBoV-1 and that one was characterised as HBoV-3. The phylogenetic analysis showed that the HBoV-1 samples had a high sequence homology to others previously identified in China, Sweden and Brazil. This is the first study conducted in the Central-West Region of Brazil to detect HBoV-1 and HBoV-3 in faecal samples from children with acute gastroenteritis. Further studies are required to define the role of HBoVs as aetiological agents of gastroenteritis.
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