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Updated: May 18, 2026

Use of Dual Optical Tweezers and Microfluidics for Single-Molecule Studies
Published on: November 18, 2022
Combined versatile high-resolution optical tweezers and single-molecule fluorescence microscopy
George Sirinakis1, Yuxuan Ren, Ying Gao
1Department of Cell Biology, Yale University School of Medicine, 333 Cedar St., New Haven, Connecticut 06520, USA.
We developed a novel instrument combining optical tweezers and single-molecule fluorescence microscopy to study complex molecular interactions. This versatile system enables simultaneous observation of DNA dynamics and oligonucleotide binding events at the single-molecule level.
Area of Science:
- Biophysics
- Molecular Biology
- Nanotechnology
Background:
- Single-molecule fluorescence and optical trapping are key techniques in molecular studies.
- Combining these methods presents significant technical challenges but offers enhanced capabilities.
- Previous combined instruments have limitations in design and functionality.
Purpose of the Study:
- To develop and characterize a novel instrument integrating dual-trap optical tweezers and single-molecule fluorescence microscopy.
- To overcome fundamental and technical challenges in combined single-molecule approaches.
- To demonstrate the instrument's capability in studying complex molecular dynamics.
Main Methods:
- Constructed a hybrid instrument with base-pair resolution dual-trap optical tweezers and single-molecule fluorescence microscopy.
- Operated optical tweezers in constant and variable force modes.
- Implemented single-molecule fluorescence detection in wide-field and confocal configurations.
Main Results:
- Successfully imaged a single stretched lambda DNA molecule.
- Investigated DNA hairpin dynamics by monitoring fluorescence and extension changes.
- Observed simultaneous fluorescence signal changes and extension pauses linked to oligonucleotide association/dissociation.
Conclusions:
- The developed versatile microscopy offers enhanced flexibility for single-molecule studies.
- This combined approach facilitates the investigation of molecular machines and assemblies.
- The instrument provides new avenues for understanding molecular interactions with high precision.
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