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A Method for Screening and Validation of Resistant Mutations Against Kinase Inhibitors
Published on: December 7, 2014
Three novel patient-derived BCR/ABL mutants show different sensitivity to second and third generation tyrosine kinase
Sara Redaelli1, Luca Mologni, Roberta Rostagno
1Department of Clinical Medicine and Prevention, University of Milano-Bicocca, S. Gerardo Hospital, Monza, Milan, Italy. sara.redaelli@unimib.it
Abstract:
BCR/ABL (Breakpoint Cluster Region protein/Abelson tyrosine-protein kinase 1) kinase domain (KD) mutations represent the most frequently described mechanism of resistance to the treatment with tyrosine kinase inhibitors (TKI) in patients with chronic myeloid leukemia (CML). Mutations may impair TKI activity by directly or indirectly impairing the drug binding to the protein. We report the discovery of three new BCR/ABL mutations, L248R, T315V, and F317R identified in two patients with CML (L248R and T315V) and in one patient with Ph+ acute lymphoblastic leukemia (ALL) (F317R). Mutations were screened against second-generation (bosutinib, nilotinib, and dasatinib), as well as third-generation TKIs (ponatinib/AP-24534 and DCC-2036). Furthermore, the activity profile of ponatinib and DCC-2036 against a panel of 24 clinically relevant BCR/ABL mutants is presented and compared to the other TKIs. The IC50 values for each TKI against the mutants and the IC50 increase over wild type BCR/ABL (relative resistance, RR) were calculated to define four resistance levels: sensitive (RR ≤ 2), moderately resistant (2 < RR ≤ 4), resistant (4 < RR ≤ 10), or highly resistant (RR > 10). L248R and T315V showed high resistance to imatinib, bosutinib, dasatinib, and nilotinib, intermediate resistance to ponatinib, but were sensitive to DCC-2036. Interestingly, F317R showed a moderate resistance to imatinib and nilotinib, but is resistant/highly resistant to dasatinib, bosutinib, ponatinib, and DCC-2036. The availability of drugs activity profiles may become a useful tool for clinicians dealing with the treatment of drug-resistant CML patients.
Insights
Three new BCR/ABL mutations (L248R, T315V, F317R) were identified in leukemia patients. DCC-2036 showed sensitivity to L248R and T315V mutations, offering new hope for drug-resistant chronic myeloid leukemia (CML) treatment.
Area of Science:
- Oncology
- Hematology
- Molecular Biology
Background:
- BCR/ABL kinase domain (KD) mutations are a primary cause of resistance to tyrosine kinase inhibitors (TKIs) in chronic myeloid leukemia (CML).
- These mutations can disrupt TKI binding, leading to treatment failure.
- Understanding novel mutations and their resistance profiles is crucial for effective CML management.
Purpose of the Study:
- To identify and characterize new BCR/ABL mutations.
- To evaluate the efficacy of existing and novel TKIs against these mutations.
- To provide a resistance profile for guiding treatment decisions in TKI-resistant CML.
Main Methods:
- Discovery of three novel BCR/ABL mutations (L248R, T315V, F317R) in CML and Ph+ ALL patients.
- Screening of mutations against second-generation (bosutinib, nilotinib, dasatinib) and third-generation TKIs (ponatinib, DCC-2036).
- Calculation of IC50 values and relative resistance (RR) to categorize resistance levels (sensitive, moderately resistant, resistant, highly resistant).
Main Results:
- L248R and T315V mutations exhibited high resistance to imatinib, bosutinib, dasatinib, and nilotinib, with intermediate resistance to ponatinib, but remained sensitive to DCC-2036.
- F317R mutation showed moderate resistance to imatinib and nilotinib, and resistance/high resistance to dasatinib, bosutinib, ponatinib, and DCC-2036.
- Defined four resistance levels based on RR values to classify TKI efficacy against specific BCR/ABL mutants.
Conclusions:
- Novel BCR/ABL mutations L248R, T315V, and F317R contribute to TKI resistance in CML and Ph+ ALL.
- DCC-2036 demonstrates significant activity against L248R and T315V mutations, offering a potential therapeutic option.
- Comprehensive drug activity profiles against BCR/ABL mutants are valuable for clinical decision-making in managing drug-resistant leukemia.
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