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Related Concept Videos

Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...

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Related Experiment Video

Updated: May 17, 2026

Energy Dispersive X-ray Tomography for 3D Elemental Mapping of Individual Nanoparticles
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Energy Dispersive X-ray Tomography for 3D Elemental Mapping of Individual Nanoparticles

Published on: July 5, 2016

Refining spatial distribution maps for atom probe tomography via data dimensionality reduction methods.

Santosh K Suram1, Krishna Rajan

  • 1Department of Materials Science and Engineering, Iowa State University, Ames, IA 50011, USA.

Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada
|October 11, 2012
PubMed
Summary
This summary is machine-generated.

A novel mathematical framework using singular value decomposition refines spatial distribution maps (SDMs) for atom probe tomography. Structurally relevant singular vectors (SRSVs) enhance atomic structure analysis, improving 3D imaging.

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Obtaining 3D Chemical Maps by Energy Filtered Transmission Electron Microscopy Tomography
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Last Updated: May 17, 2026

Energy Dispersive X-ray Tomography for 3D Elemental Mapping of Individual Nanoparticles
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Energy Dispersive X-ray Tomography for 3D Elemental Mapping of Individual Nanoparticles

Published on: July 5, 2016

Obtaining 3D Chemical Maps by Energy Filtered Transmission Electron Microscopy Tomography
08:15

Obtaining 3D Chemical Maps by Energy Filtered Transmission Electron Microscopy Tomography

Published on: June 9, 2018

Area of Science:

  • Materials Science
  • Data Analysis
  • Nanotechnology

Background:

  • Spatial distribution maps (SDMs) are crucial for analyzing atomic structures.
  • Understanding covariance in interatomic frequency distributions within SDMs is challenging.
  • Existing methods may not fully capture subtle atomic structural details.

Purpose of the Study:

  • To develop a mathematical framework for analyzing covariance in SDM data.
  • To identify and utilize structurally relevant singular vectors (SRSVs) for enhanced structural information extraction.
  • To refine SDMs for improved three-dimensional atom probe tomography (3D APT).

Main Methods:

  • Application of singular value decomposition (SVD) to SDM data.
  • Identification of singular vectors capturing covariance within SDM datasets.
  • Extraction of information from z-SDMs using SRSVs to capture interplanar atomic structure.
  • Classification of SDM slices into relevant information, noise, and aberrations.

Main Results:

  • Obtained singular vectors that effectively capture covariance in SDM data.
  • Identified SRSVs that provide insights into atomic plane offsets and neighborhood covariance.
  • Developed refined z-SDMs capable of distinguishing structural information from noise and aberrations.
  • Constructed refined xy-SDMs yielding enhanced structural details for 3D APT.

Conclusions:

  • The SVD-based framework and SRSVs offer a robust method for analyzing atomic structure in SDMs.
  • Refined SDMs improve the accuracy and interpretability of data in 3D atom probe tomography.
  • This approach enhances the extraction of meaningful structural information from complex nanoscale datasets.