Related Experiment Video
Updated: May 17, 2026

Identification of Antibacterial Immunity Proteins in Escherichia coli using MALDI-TOF-TOF-MS/MS and Top-Down Proteomic Analysis
Published on: May 23, 2021
Superantigenic activity of emm3 Streptococcus pyogenes is abrogated by a conserved, naturally occurring smeZ mutation
Claire E Turner1, Mary Sommerlad, Karen McGregor
1Department of Infectious Diseases & Immunity, Imperial College London, London, United Kingdom.
Abstract:
Streptococcus pyogenes M/emm3 strains have been epidemiologically linked with enhanced infection severity and risk of streptococcal toxic shock syndrome (STSS), a syndrome triggered by superantigenic stimulation of T cells. Comparison of S. pyogenes strains causing STSS demonstrated that emm3 strains were surprisingly less mitogenic than other emm-types (emm1, emm12, emm18, emm28, emm87, emm89) both in vitro and in vivo, indicating poor superantigenic activity. We identified a 13 bp deletion in the superantigen smeZ gene of all emm3 strains tested. The deletion led to a premature stop codon in smeZ, and was not present in other major emm-types tested. Expression of a functional non-M3-smeZ gene successfully enhanced mitogenic activity in emm3 S. pyogenes and also restored mitogenic activity to emm1 and emm89 S. pyogenes strains where the smeZ gene had been disrupted. In contrast, the M3-smeZ gene with the 13 bp deletion could not enhance or restore mitogenicity in any of these S. pyogenes strains, confirming that M3-smeZ is non-functional regardless of strain background. The mutation in M3-smeZ reduced the potential for M3 S. pyogenes to induce cytokines in human tonsil, but not during invasive infection of superantigen-sensitive mice. Notwithstanding epidemiological associations with STSS and disease severity, emm3 strains have inherently poor superantigenicity that is explained by a conserved mutation in smeZ.
Insights
Streptococcus pyogenes emm3 strains, despite links to severe infections, exhibit poor superantigen activity due to a specific mutation in the smeZ gene. This conserved mutation explains their reduced ability to trigger T cell responses.
Area of Science:
- Microbiology
- Immunology
- Genetics
Background:
- Streptococcus pyogenes emm3 strains are associated with severe infections and streptococcal toxic shock syndrome (STSS).
- STSS is triggered by superantigens that stimulate T cells.
- Previous observations suggested emm3 strains were less mitogenic than other emm types.
Purpose of the Study:
- To investigate the underlying cause of reduced superantigenic activity in emm3 Streptococcus pyogenes strains.
- To determine the role of the superantigen gene smeZ in the mitogenicity of emm3 strains.
Main Methods:
- Comparative analysis of smeZ gene sequences in various emm-types of Streptococcus pyogenes.
- In vitro and in vivo experiments to assess the mitogenic activity of different S. pyogenes strains and smeZ variants.
- Evaluation of cytokine induction in human tonsil and mouse models.
Main Results:
- A conserved 13 bp deletion in the smeZ gene of emm3 strains was identified, leading to a premature stop codon and a non-functional M3-smeZ protein.
- Expression of a functional smeZ gene restored mitogenic activity in emm3 strains and in other strains with disrupted smeZ.
- The mutated M3-smeZ could not restore or enhance mitogenicity in any tested S. pyogenes strain.
- The mutation reduced cytokine induction in human tonsil tissue but not in a mouse model.
Conclusions:
- The inherent poor superantigenicity of emm3 Streptococcus pyogenes strains is explained by a conserved, non-functional mutation in the smeZ gene.
- This genetic defect in smeZ contributes to the observed differences in virulence and STSS risk associated with emm3 strains.
Related Concept Videos
Clinical Significance of Antibiotic Resistance
Mechanism of Antibiotic Resistance in MRSA
Mismatch Repair
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
Mismatch Repair
Defense Against Bacterial Pathogens
Phagocytes
Phagocytes are the frontline soldiers of the immune system. They include neutrophils and macrophages. Neutrophils are the most abundant type of white blood cell and are quickly mobilized to the site of infection. Macrophages are larger cells that patrol...
