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Partial least squares methods: partial least squares correlation and partial least square regression.

Hervé Abdi1, Lynne J Williams

  • 1School of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA. herve@utdallas.edu

Methods in Molecular Biology (Clifton, N.J.)
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Summary
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Partial least square methods analyze relationships between two data tables. These techniques, including partial least square correlation and regression, can be extended for inferential questions using cross-validation.

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Area of Science:

  • Multivariate statistical analysis
  • Data mining and machine learning

Background:

  • Partial least square (PLS) methods, also known as projection to latent structures, are designed to relate information from two datasets measuring the same observations.
  • PLS methods derive latent variables, which are optimal linear combinations of variables within a data table, to capture underlying structures.

Purpose of the Study:

  • To present and illustrate partial least square correlation (PLSC) and partial least square regression (PLSR).
  • To demonstrate the extension of these descriptive multivariate analysis techniques to address inferential questions.

Main Methods:

  • Partial least square correlation (PLSC) identifies shared information between two tables by maximizing covariance between two sets of latent variables.
  • Partial least square regression (PLSR) predicts one data table from another using latent variables derived from the predictor table to optimize prediction accuracy.
  • Cross-validation techniques, including bootstrap and permutation tests, are employed to extend PLSC and PLSR for inferential analyses.

Main Results:

  • The study illustrates the application and interpretation of PLSC for finding shared information and PLSR for predictive modeling between datasets.
  • The effectiveness of cross-validation methods in enabling inferential statistical questions using PLS techniques is demonstrated.

Conclusions:

  • Partial least square methods offer robust approaches for exploring relationships in complex datasets.
  • The integration of cross-validation with PLS techniques expands their utility from descriptive to inferential statistical analysis.