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Kinase Inhibitor Screening In Self-assembled Human Protein Microarrays
13:22

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Published on: October 23, 2019

Affinity-based probes based on type II kinase inhibitors.

Pratistha Ranjitkar1, B Gayani K Perera, Danielle L Swaney

  • 1Department of Chemistry, University of Washington, Seattle, Washington 98195, USA.

Journal of the American Chemical Society
|October 24, 2012
PubMed
Summary

New probes profile protein kinases in complex biological samples. This chemical proteomics approach identifies active kinases in cell extracts and live cells for therapeutic target discovery.

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Area of Science:

  • Biochemistry
  • Chemical Biology
  • Proteomics

Background:

  • Protein kinases are crucial in mammalian signal transduction and represent important therapeutic targets.
  • Studying protein kinase function necessitates advanced techniques for profiling within complex proteomes.
  • Existing methods may lack the specificity or applicability for profiling kinases in native cellular environments.

Purpose of the Study:

  • To develop and validate novel active site-directed probes for profiling protein kinases.
  • To enable the characterization of kinase activity in both cell extracts and live cells.
  • To advance chemical proteomics for interrogating kinase active sites in physiological contexts.

Main Methods:

  • Design of probes featuring general ligands to stabilize inactive kinase conformations.
  • Incorporation of trifluoromethylphenyl diazirine for covalent modification.
  • Utilizing alkyne moieties for efficient kinase enrichment and identification.
  • Application of the probes in whole cell extracts and live mammalian cells.

Main Results:

  • Successful profiling of diverse serine/threonine and tyrosine kinases in whole cell extracts.
  • Selective labeling and identification of kinase targets within live cells.
  • Demonstration of the probes' ability to capture kinases in specific inactive conformations.
  • Validation of a chemical proteomics strategy for kinase active site interrogation.

Conclusions:

  • The developed active site-directed probes offer a powerful tool for kinase profiling.
  • This chemical proteomics approach is effective in complex biological systems, including live cells.
  • The technology provides valuable insights into kinase activity in physiologically relevant environments.
  • These probes can aid in the discovery and validation of therapeutic kinase targets.