Related Experiment Video
Updated: May 17, 2026

13:33
Infinium Assay for Large-scale SNP Genotyping Applications
Published on: November 19, 2013
Genome-wide association studies: inherent limitations and future challenges
Yan Du1, Jiaxin Xie, Wenjun Chang
1Department of Epidemiology, Second Military Medical University, Shanghai 200433, China.
Frontiers of Medicine
|November 6, 2012
Summary
Genome-wide association studies (GWAS) identify genetic disease links but require further research. Post-GWAS functional studies and pharmacogenomics are crucial for personalized medicine, using liver cancer as an example.
Area of Science:
- Genetics
- Genomics
- Personalized Medicine
Background:
- Genome-wide association studies (GWAS) have successfully identified genetic variants linked to complex diseases like cancer.
- GWAS are increasingly popular in China, but inherent limitations necessitate further investigation.
Purpose of the Study:
- To highlight the limitations of GWAS.
- To discuss future challenges in the post-GWAS era.
- To use hepatocellular carcinoma (HCC) as a case study.
Main Methods:
- Review of GWAS findings and their implications.
- Discussion of post-GWAS research requirements, including deep sequencing and functional studies.
- Exploration of the role of pharmacogenomics in translating GWAS results.
Main Results:
- GWAS provide insights into disease genetic architecture.
- Significant work is needed in the post-GWAS era to understand biological mechanisms.
- GWAS findings, coupled with pharmacogenomics, are paving the way for personalized medicine.
Conclusions:
- Hepatocellular carcinoma (HCC) serves as an example to illustrate GWAS limitations.
- Future research must focus on functional validation and clinical translation of GWAS discoveries.
- Addressing GWAS challenges is essential for advancing personalized medicine and understanding disease.
Related Concept Videos
Genome-wide Association Studies-GWAS
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
Next-generation Sequencing
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Pharmacogenomics: Identification of New Drug Targets
Advances in genomics have profoundly influenced drug discovery by increasing both the speed and accuracy of pharmaceutical development. Pharmacogenomics, which examines how genetic variation influences drug response, facilitates the identification of novel therapeutic targets and enables patient stratification for personalized treatment. These strategies contribute to improved drug efficacy, minimized adverse effects, and more efficient clinical trial design.Mapping genetic differences...
Principles of Pharmacogenetics: Types of Genetic Variants
The human genome is over 99.9% identical between individuals, yet genetic differences exist at millions of bases. The human genome contains approximately 3 million variant positions per individual, many of which are heterozygous, contributing to genetic diversity and individual traits. Genetic variations include single-nucleotide polymorphisms (SNPs), insertions, deletions, and copy number variations (CNVs).SNPs, the most common variation, involve single-base changes in DNA. These can be...
Modern Molecular Taxonomy
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
