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RBDT: A Computerized Task System based in Transposition for the Continuous Analysis of Relational Behavior Dynamics in Humans
11:09

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Published on: July 17, 2021

DDBJ new system and service refactoring.

Osamu Ogasawara1, Jun Mashima, Yuichi Kodama

  • 1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan. oogasawa@nig.ac.jp

Nucleic Acids Research
|November 28, 2012
PubMed
Summary
This summary is machine-generated.

The DNA Data Bank of Japan upgraded its systems to handle massive genomic data, improving performance and analytical resources for researchers worldwide.

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Area of Science:

  • Bioinformatics
  • Genomics
  • Data Management

Background:

  • The DNA Data Bank of Japan (DDBJ) is a primary nucleotide sequence database.
  • It collaborates internationally with NCBI and EBI under the International Nucleotide Sequence Database Collaboration (INSDC).
  • DDBJ provides nucleotide sequence data and raw reads from next-generation sequencers in the Sequence Read Archive (SRA).

Purpose of the Study:

  • To address the increasing volume of genomic data.
  • To enhance system performance and analytical capabilities for biological information.
  • To upgrade the DDBJ's computational infrastructure.

Main Methods:

  • Replacement of the previous computer system with a commodity cluster-based system.
  • Implementation of a system with 122.5 TFlops CPU capacity and 5 PB storage.
  • Refactoring of substantial portions of the DDBJ software systems.

Main Results:

  • Significant improvements in system performance were achieved.
  • The upgraded system is capable of handling the genomic data deluge.
  • Enhanced capacity for storing and analyzing nucleotide sequence data and SRA reads.

Conclusions:

  • The DDBJ system upgrade successfully enhanced its capacity and performance.
  • The improved infrastructure supports researchers with advanced biological information resources.
  • The DDBJ remains a vital resource for global genomic data sharing and analysis.