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Updated: May 16, 2026

Stable Knockdown of Genes Encoding Extracellular Matrix Proteins in the C2C12 Myoblast Cell Line Using Small-Hairpin (sh)RNA
Published on: February 12, 2020
TFE3 inhibits myoblast differentiation in C2C12 cells via down-regulating gene expression of myogenin
Ayano Naka1, Kaoruko Tada Iida, Yoshimi Nakagawa
1Doctoral Program of Sports Medicine, Graduate School of Comprehensive Human Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577, Japan.
Abstract:
Transcription factor E3 (TFE3) belongs to a basic helix-loop-helix family, and is involved in the biology of osteoclasts, melanocytes and their malignancies. We previously reported the metabolic effects of TFE3 on insulin in the liver and skeletal muscles in animal models. In the present study, we explored a novel role for TFE3 in a skeletal muscle cell line. When TFE3 was overexpressed in C2C12 myoblasts by adenovirus before induction of differentiation, myogenic differentiation of C2C12 cells was significantly inhibited. Adenovirus-mediated TFE3 overexpression also suppressed the gene expression of muscle regulatory factors (MRFs), such as MyoD and myogenin, during C2C12 differentiation. In contrast, knockdown of TFE3 using adenovirus encoding short-hairpin RNAi specific for TFE3 dramatically promoted myoblast differentiation associated with significantly increased expression of MRFs. Consistent with these findings, promoter analyses via luciferase reporter assay and electrophoretic mobility shift assay suggested that TFE3 negatively regulated myogenin promoter activity by direct binding to an E-box, E2, in the myogenin promoter. These findings indicated that TFE3 has a regulatory role in myoblast differentiation, and that transcriptional suppression of myogenin expression may be part of the mechanism of action.
Insights
Transcription factor E3 (TFE3) inhibits skeletal muscle cell differentiation by suppressing myogenin. Knocking down TFE3 promotes this process, revealing TFE3
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Transcription factor E3 (TFE3) is a basic helix-loop-helix protein involved in osteoclast and melanocyte biology.
- Previous research highlighted TFE3's metabolic influence on insulin in liver and skeletal muscle.
- The specific role of TFE3 in skeletal muscle cell differentiation remained largely unexplored.
Purpose of the Study:
- To investigate the novel role of TFE3 in regulating skeletal muscle cell differentiation.
- To elucidate the molecular mechanisms by which TFE3 affects myogenesis.
- To determine TFE3's impact on the expression of key muscle regulatory factors (MRFs).
Main Methods:
- Adenovirus-mediated overexpression and knockdown of TFE3 in C2C12 myoblasts.
- Assessment of myogenic differentiation markers and gene expression.
- Luciferase reporter assays and electrophoretic mobility shift assays (EMSA) for promoter analysis.
Main Results:
- TFE3 overexpression significantly inhibited myogenic differentiation of C2C12 cells.
- TFE3 suppressed the expression of MRFs, including MyoD and myogenin.
- TFE3 knockdown promoted myoblast differentiation and increased MRF expression.
- TFE3 directly binds to the myogenin promoter's E-box (E2) and negatively regulates its activity.
Conclusions:
- TFE3 plays a critical inhibitory role in skeletal muscle cell differentiation.
- Transcriptional suppression of myogenin expression by TFE3 is a key mechanism underlying its effect on myogenesis.
- TFE3 acts as a negative regulator of myoblast differentiation.
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