STEM_CELL: a software tool for electron microscopy: part 1--simulations
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Updated: May 15, 2026

A Method for 3D Reconstruction and Virtual Reality Analysis of Glial and Neuronal Cells
Published on: September 28, 2019
Vincenzo Grillo1, Enzo Rotunno
1S3-NANO, CNR Via Campi 213A, I-41125 Modena, Italy. vincenzo.grillo@cnr.it
Abstract:
The software STEM_CELL, here presented, is a useful tool for (S) TEM simulation. In particular innovative solutions are presented in (1) the supercell manipulation and parameters setting (2) simulation execution through the modified Kirkland routines (3) simulation post-processing with extended output and comprehensive graphic tools (4) image contrast interpretation through a strain channeling equation accounting for strain effects in STEM-ADF.
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