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Updated: May 15, 2026

A Simple Method to Identify Kinases That Regulate Embryonic Stem Cell Pluripotency by High-throughput Inhibitor Screening
Published on: May 12, 2017
A genome-wide RNAi screen reveals MAP kinase phosphatases as key ERK pathway regulators during embryonic stem cell
Shen-Hsi Yang1, Tuzer Kalkan, Claire Morrisroe
1Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom.
Abstract:
Embryonic stem cells and induced pluripotent stem cells represent potentially important therapeutic agents in regenerative medicine. Complex interlinked transcriptional and signaling networks control the fate of these cells towards maintenance of pluripotency or differentiation. In this study we have focused on how mouse embryonic stem cells begin to differentiate and lose pluripotency and, in particular, the role that the ERK MAP kinase and GSK3 signaling pathways play in this process. Through a genome-wide siRNA screen we have identified more than 400 genes involved in loss of pluripotency and promoting the onset of differentiation. These genes were functionally associated with the ERK and/or GSK3 pathways, providing an important resource for studying the roles of these pathways in controlling escape from the pluripotent ground state. More detailed analysis identified MAP kinase phosphatases as a focal point of regulation and demonstrated an important role for these enzymes in controlling ERK activation kinetics and subsequently determining early embryonic stem cell fate decisions.
Insights
Mouse embryonic stem cells lose pluripotency via differentiation regulated by ERK and GSK3 pathways. A genome-wide screen identified over 400 genes, highlighting MAP kinase phosphatases as key regulators of cell fate decisions.
Area of Science:
- Stem cell biology
- Molecular and cellular signaling
Background:
- Embryonic stem cells (ESCs) and induced pluripotent stem cells (iPSCs) are crucial for regenerative medicine.
- Pluripotency maintenance and differentiation are controlled by intricate transcriptional and signaling networks.
Purpose of the Study:
- To investigate the differentiation process in mouse ESCs and the roles of ERK MAP kinase and GSK3 signaling pathways.
- To identify genes involved in pluripotency loss and differentiation onset.
Main Methods:
- Genome-wide siRNA screen to identify regulatory genes.
- Functional association analysis of identified genes with ERK and GSK3 pathways.
Main Results:
- Over 400 genes were identified as involved in pluripotency loss and differentiation.
- Identified genes are functionally linked to the ERK and/or GSK3 signaling pathways.
- MAP kinase phosphatases were highlighted as critical regulators of ERK activation kinetics and ESC fate.
Conclusions:
- ERK and GSK3 signaling pathways are central to ESC differentiation and pluripotency loss.
- MAP kinase phosphatases play a pivotal role in controlling the timing of ERK activation, thereby influencing early ESC fate decisions.
Related Concept Videos
MAPK Signaling Cascades
Maintenance of the ES Cell State

