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Experimental Approaches to Study Mitochondrial Localization and Function of a Nuclear Cell Cycle Kinase, Cdk1
Published on: February 25, 2016
Characterization of growth suppressive functions of a splice variant of cyclin D2
Karim Wafa1, Jessica MacLean, Feixiong Zhang
1Department of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada.
Abstract:
We have recently cloned a novel splice variant of cyclin D2 termed as cycD2SV. CycD2SV overexpression in several immortalized cell lines led to formation of ubiquitinated protein aggregates accompanied by a significant decrease in cell proliferation. Based on immuno co-localization and ultrastructural analysis experiments, cycD2SV protein aggregates were frequently found in various subcellular compartments such as endosomes, autophagosomes, lysosomes and the microtubule organizing centre. Secondary structure analysis revealed that the amino terminal α-helix in cycD2SV is not tightly packed with the cyclin box suggesting a misfolded conformation compared to other cyclins. Deletion analysis suggests that 1-53 amino acid region of cycD2SV may be required for protein aggregation and 54-136 amino acid region may mediate cell cycle inhibition. Based on co-immunoprecipitation experiments, we have shown that cycD2SV binds to cycD2 as well as CDK4. In addition, gene expression analysis demonstrated an upregulation in GADD45α and dynamin 2 mRNA levels in cycD2SV overexpressing cells. These two proteins are known to play critical roles in the DNA damage response and apoptosis pathways. TUNEL experiments were negative for apoptosis, however, cycD2SV expressing cells were more sensitive to cell death induced by external stressors such as trypsinization. Collectively our results suggest that cycD2SV mediates cell cycle inhibition by sequestering endogenous cell cycle proteins, such as cycD2 and CDK4, and possibly targeting them for ubiquitin mediated protein degradation.
Insights
A novel cyclin D2 splice variant (cycD2SV) forms protein aggregates, inhibiting cell proliferation and causing sensitivity to cell death. This variant may sequester and degrade cell cycle proteins like cyclin D2 and CDK4.
Area of Science:
- Cell Biology
- Molecular Biology
- Cancer Research
Background:
- Cyclin D2 is a key regulator of the cell cycle.
- Alternative splicing can generate protein variants with altered functions.
- Understanding novel splice variants is crucial for cell cycle regulation research.
Purpose of the Study:
- To characterize a newly identified cyclin D2 splice variant, cycD2SV.
- To investigate the functional consequences of cycD2SV overexpression in immortalized cell lines.
- To elucidate the mechanisms underlying cycD2SV-mediated cell cycle inhibition.
Main Methods:
- Cloning and overexpression of cycD2SV.
- Immunofluorescence and ultrastructural analysis for protein localization.
- Secondary structure and deletion analysis for protein conformation and function.
- Co-immunoprecipitation to identify binding partners.
- Gene expression analysis (mRNA levels) and TUNEL assays.
Main Results:
- cycD2SV overexpression induced ubiquitinated protein aggregates in various subcellular compartments.
- cycD2SV exhibited a potentially misfolded conformation and mediated cell cycle inhibition.
- cycD2SV interacted with endogenous cyclin D2 and CDK4.
- Upregulation of GADD45α and dynamin 2 mRNA was observed.
- Cells overexpressing cycD2SV showed increased sensitivity to external stressors but not apoptosis.
Conclusions:
- cycD2SV induces cell cycle arrest and protein aggregation.
- The N-terminal region (1-53 aa) is implicated in aggregation, while the C-terminal region (54-136 aa) mediates cell cycle inhibition.
- cycD2SV may inhibit cell cycle progression by sequestering and promoting degradation of cyclin D2 and CDK4.
- The variant sensitizes cells to stress-induced death, suggesting a role in cellular stress response pathways.
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