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Updated: May 15, 2026

A Murine Model of Fetal Exposure to Maternal Inflammation to Study the Effects of Acute Chorioamnionitis on Newborn Intestinal Development
Published on: June 24, 2020
Meconium microbiota types dominated by lactic acid or enteric bacteria are differentially associated with maternal
M J Gosalbes1, S Llop, Y Vallès
1Unidad Mixta de Investigación en Genómica y Salud-Centro Superior de Investigación en Salud Pública Generalitat Valenciana, Institut Cavanilles de Biodiversitat i Biologia Evolutiva Universitat de València, Valencia, Spain.
Background:
Culture-dependent methods have shown that meconium, the newborn's first intestinal discharge, is not sterile, but the diversity of bacteria present in this material needs to be further characterized by means of more sensitive molecular techniques.
Objective:
Our aims were to characterize molecularly the meconium microbiota in term infants, to assess whether it contributes to the future microbiota of the infants' gastrointestinal tract, and to evaluate how it relates to lifestyle variables and atopy-related conditions.
Methods:
We applied high-throughput pyrosequencing of the 16S rRNA gene to study the meconium microbiota in twenty term newborns from a Spanish birth cohort. For comparison, we characterized the microbiota in fecal samples from seven pregnant women days before delivery and in two series of infant samples spanning the first seven months of life. We also compared our data with vaginal and skin microbiota characterized in independent studies. Different types of meconium microbiota were defined based on taxonomic composition and abundance and their associations with different factors were statistically evaluated.
Results:
The meconium microbiota differs from those in adult feces, vagina and skin, but resembles that of fecal samples from young infants. Meconium samples clustered into two types with different bacterial diversity, richness and composition. One of the types was less diverse, dominated by enteric bacteria and associated with a history of atopic eczema in the mother (P = 0.038), whereas the second type was dominated by lactic acid bacteria and associated with respiratory problems in the infant (P = 0.040).
Conclusions & Clinical Relevance:
Our findings suggest that the meconium microbiota has an intrauterine origin and participates in gut colonization. Although based on a small population sample, our association analyses also suggest that the type of bacteria detected in meconium is influenced by maternal factors and may have consequences for childhood health.
Insights
The newborn
Area of Science:
- Microbiology
- Neonatal Health
- Gut Microbiome
Background:
- Culture-dependent methods indicate meconium is not sterile, but its bacterial diversity requires advanced molecular characterization.
- Understanding the meconium microbiota is crucial for neonatal health and early life gut colonization.
Purpose of the Study:
- To molecularly characterize the meconium microbiota in term infants.
- To determine if meconium microbiota contributes to the infant's gastrointestinal tract microbiota.
- To evaluate associations between meconium microbiota and maternal lifestyle or infant atopy-related conditions.
Main Methods:
- High-throughput pyrosequencing of the 16S rRNA gene was used to analyze meconium microbiota in 20 term newborns.
- Comparison with maternal pre-delivery fecal samples, infant fecal samples up to seven months, and independent vaginal/skin microbiota studies.
- Statistical evaluation of meconium microbiota types based on taxonomic composition, abundance, and associated factors.
Main Results:
- Meconium microbiota differs from adult feces, vagina, and skin, but resembles that of young infants.
- Two distinct meconium microbiota types were identified: one less diverse, dominated by enteric bacteria, linked to maternal atopic eczema; the other dominated by lactic acid bacteria, linked to infant respiratory problems.
Conclusions:
- Meconium microbiota likely originates in utero and plays a role in initial gut colonization.
- Maternal factors appear to influence meconium bacterial composition, potentially impacting infant health outcomes.
- Further research with larger cohorts is warranted to confirm these associations and their clinical implications.
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