Related Experiment Video
Updated: May 14, 2026

09:43
Isolation and Characterization of RNA-Containing Exosomes
Published on: January 9, 2012
RNA decay machines: the exosome
Aleksander Chlebowski1, Michał Lubas, Torben Heick Jensen
1Institute of Genetics and Biotechnology, University of Warsaw, Warsaw, Poland.
Biochimica Et Biophysica Acta
|January 29, 2013
Summary
The eukaryotic RNA exosome complex, a ribonuclease, processes, quality controls, and degrades RNA. Its cellular roles and evolutionary history are increasingly understood, moving research focus from in vitro to in vivo studies.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- The RNA exosome is a crucial multisubunit ribonuclease in eukaryotic cells.
- It plays a vital role in RNA processing, quality control, and degradation across Eukaryota.
- Its complex functions involve a dozen proteins with limited catalytic activities.
Purpose of the Study:
- To provide a comprehensive overview of the RNA exosome complex.
- To detail its structure, enzymatic properties, and involvement in RNA metabolism pathways.
- To explore its evolutionary history and compare it with prokaryotic complexes.
Main Methods:
- Review of existing literature on yeast and human exosomes.
- Analysis of enzymatic properties of the exosome holocomplex.
- Examination of RNA metabolism pathways involving the exosome.
Main Results:
- The catalytic properties of the eukaryotic exosome are well-characterized.
- Exosome function is dependent on numerous auxiliary factors.
- Research is increasingly focused on the exosome's in vivo cellular roles.
Conclusions:
- The RNA exosome's cellular functions are diverse and essential for RNA homeostasis.
- Understanding the interplay of its activities is key to comprehending cell physiology.
- Comparative analysis with prokaryotic systems offers evolutionary insights.
Related Concept Videos
Overview of Exosomes
Exosomes are stable, lipid bilayer-enclosed vesicles capable of crossing biological barriers. They can carry a wide range of molecules required for intercellular communication. Once exosomes are released from the cell where they originated, they enter a recipient cell through various pathways such as fusion, receptor-mediated endocytosis, macropinocytosis, and phagocytosis.
Stahl et al. discovered exosomes in 1983, but the exosomes were initially considered waste products released from the...
Stahl et al. discovered exosomes in 1983, but the exosomes were initially considered waste products released from the...
Nuclear Export of mRNA
Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
Nuclear Export of mRNA
Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
Nonsense-mediated mRNA Decay
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Nonsense-mediated mRNA Decay
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Exon Recombination
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Exon shuffling follows “splice frame rules.” Each exon has three reading...

