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Updated: May 14, 2026

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
Hedgehog signalling is downregulated in celiac disease
Rui Liang1, Rupert Hinds, Helen E Abud
1Key Laboratory of Developmental Diseases in Childhoold (Chongqing Medical University), Ministry of Education, China.
Insights
The hedgehog (Hh) signalling pathway genes Sonic hh, Indian hh, PTCH 1, and BMP4 were significantly downregulated in children with celiac disease (CD). This suggests the Hh pathway is involved in the mucosal lesions characteristic of CD.
Area of Science:
- Gastroenterology
- Immunology
- Molecular Biology
Background:
- Celiac disease (CD) is an autoimmune disorder in genetically susceptible individuals.
- Animal studies suggest the hedgehog (Hh) signalling pathway influences gut inflammation, injury, and repair.
Purpose of the Study:
- To investigate the expression of Hh signalling pathway components in pediatric celiac disease patients.
- To determine if Hh pathway gene expression differs between children with CD and healthy controls.
Main Methods:
- Duodenal biopsies were obtained from children undergoing gastroscopy for CD diagnosis and from controls.
- RNA was extracted, and complementary DNA synthesized for gene expression analysis.
- Real-time PCR quantified messenger RNA levels for Sonic hh, Indian hh, PTCH 1, and BMP4, with relative quantification using the ΔΔCt method.
Main Results:
- Expression of Sonic hh was 58% lower, and Indian hh 44% lower in CD patients compared to controls.
- Expression of Hh receptor PTCH 1 decreased by 71%, and Hh target gene BMP4 by 42% in CD patients.
- All examined Hh signalling pathway genes showed consistent downregulation in untreated CD.
Conclusions:
- Hedgehog signalling pathway genes are downregulated in children with untreated celiac disease.
- These findings indicate a potential role for the Hh signalling pathway in the pathogenesis of CD-related mucosal lesions.
Background:
Celiac disease (CD) is a common autoimmune disorder of the small intestine that occurs in genetically predisposed individuals. Animal studies have suggested that the hedgehog (Hh) signalling pathway is involved in gut inflammation, injury and repair.
Objective:
To examine the expression of components of the Hh signalling pathway in CD.
Methods:
Children undergoing gastroscopy investigation for CD at Monash University (Victoria, Australia), and other children undergoing gastroscopy in whom small bowel pathology was not expected (ie, controls), were included in the present study. One histopathologist, who was blinded to the biopsy data, analyzed the biopsies and a diagnosis of CD was made according to standard Marsh criteria. From these samples, RNA was extracted and complementary DNA was synthesized using reverse transcription polymerase chain reaction. The levels of Hh ligand Sonic hh, Indian hh, protein patched homologue 1 (PTCH 1) and bone morphogenetic protein 4 (BMP4) messenger RNA were quantified by real-time polymerase chain reaction. Relative expression quantification was performed using the ΔΔCt method.
Results:
Duodenal biopsies were collected from 37 children. There were 20 CD specimens and 17 normal controls. The relative expression of Sonic hh from CD patients was 58% lower than that of the controls; similarly, Indian hh expression was decreased in children with CD by 44%. Compared with controls, the expression of Hh receptor PTCH 1 decreased by 71% and the expression of the Hh target gene BMP4 by 42%.
Conclusions:
The expression of the Hh signalling pathway genes was consistently downregulated in untreated CD children. These results suggest that the Hh signalling pathway plays a role in the mucosal lesions encountered in CD.
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