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Updated: May 14, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
A human tRNA methyltransferase 9-like protein prevents tumour growth by regulating LIN9 and HIF1-α
Ulrike Begley1, Maria Soledad Sosa, Alvaro Avivar-Valderas
1College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY, USA.
Abstract:
Emerging evidence points to aberrant regulation of translation as a driver of cell transformation in cancer. Given the direct control of translation by tRNA modifications, tRNA modifying enzymes may function as regulators of cancer progression. Here, we show that a tRNA methyltransferase 9-like (hTRM9L/KIAA1456) mRNA is down-regulated in breast, bladder, colorectal, cervix and testicular carcinomas. In the aggressive SW620 and HCT116 colon carcinoma cell lines, hTRM9L is silenced and its re-expression and methyltransferase activity dramatically suppressed tumour growth in vivo. This growth inhibition was linked to decreased proliferation, senescence-like G0/G1-arrest and up-regulation of the RB interacting protein LIN9. Additionally, SW620 cells re-expressing hTRM9L did not respond to hypoxia via HIF1-α-dependent induction of GLUT1. Importantly, hTRM9L-negative tumours were highly sensitive to aminoglycoside antibiotics and this was associated with altered tRNA modification levels compared to antibiotic resistant hTRM9L-expressing SW620 cells. Our study links hTRM9L and tRNA modifications to inhibition of tumour growth via LIN9 and HIF1-α-dependent mechanisms. It also suggests that aminoglycoside antibiotics may be useful to treat hTRM9L-deficient tumours.
Insights
The tRNA methyltransferase 9-like (hTRM9L) enzyme suppresses tumor growth by regulating cell proliferation and response to hypoxia. hTRM9L deficiency increases sensitivity to aminoglycoside antibiotics in cancer treatment.
Area of Science:
- Molecular Biology
- Cancer Research
- Biochemistry
Background:
- Aberrant translation regulation drives cancer cell transformation.
- tRNA modifications directly control translation, suggesting tRNA modifying enzymes regulate cancer progression.
Purpose of the Study:
- Investigate the role of tRNA methyltransferase 9-like (hTRM9L) in cancer progression.
- Determine the therapeutic potential of targeting hTRM9L or its associated pathways.
Main Methods:
- Analysis of hTRM9L mRNA levels in various carcinomas.
- In vivo tumor growth suppression assays in colon carcinoma cell lines (SW620, HCT116) with re-expressed hTRM9L.
- Assessment of proliferation, cell cycle arrest, LIN9 expression, HIF1-α/GLUT1 pathway, and response to aminoglycoside antibiotics.
Main Results:
- hTRM9L mRNA is down-regulated in multiple cancer types.
- hTRM9L re-expression suppressed tumor growth, decreased proliferation, induced G0/G1 arrest, and upregulated LIN9.
- hTRM9L re-expression inhibited hypoxia-induced GLUT1 expression via HIF1-α.
- hTRM9L-deficient tumors showed increased sensitivity to aminoglycoside antibiotics.
Conclusions:
- hTRM9L and tRNA modifications inhibit tumor growth through LIN9 and HIF1-α-dependent mechanisms.
- Aminoglycoside antibiotics may be effective for treating hTRM9L-deficient tumors.
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