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Transcriptome Profiling of In-Vivo Produced Bovine Pre-implantation Embryos Using Two-color Microarray Platform
Published on: January 30, 2017
Regulatory microRNA network identification in bovine blastocyst development.
Karen Goossens1, Pieter Mestdagh, Steve Lefever
1Department of Nutrition, Genetics and Ethology, Ghent University, Merelbeke, Belgium. karen.goossens@ugent.be
Stem Cells and Development
|February 13, 2013
Summary
MicroRNAs (miRNAs) regulate bovine blastocyst development by controlling cell fate. Specifically, miR-218 influences NANOG expression in response to FGF signaling, impacting early embryonic lineage segregation.
Area of Science:
- Developmental Biology
- Epigenetics
- Mammalian Embryogenesis
Background:
- Mammalian blastocyst formation involves trophectoderm, hypoblast, and epiblast lineage segregation.
- Cell fate determination is controlled by transcription factors and microRNAs (miRNAs).
- miRNAs post-transcriptionally regulate pluripotency and differentiation during early embryogenesis.
Purpose of the Study:
- To investigate the role of miRNAs in early bovine lineage segregation.
- To compare miRNA expression profiles between early and hatched bovine blastocysts.
- To identify specific miRNA-mRNA interactions regulating bovine blastocyst development.
Main Methods:
- miRNA expression profiling using reverse transcription-quantitative PCR.
- Integrative analysis of miRNA and mRNA expression data.
- In vitro luciferase reporter assays for miRNA-mRNA interaction validation.
- Interference with FGF signaling pathway to assess functional impact.
Main Results:
- Identified eight upregulated and four downregulated miRNAs in hatched bovine blastocysts.
- Confirmed direct interactions between miR-218 and CDH2/NANOG, and miR-449b and NOTCH1.
- Demonstrated that miR-218 regulates NANOG expression in response to FGF signaling in the bovine blastocyst.
Conclusions:
- Established a miRNA signature for the bovine blastocyst.
- Elucidated functional roles of specific miRNAs in regulating cell fate transcription factors.
- Expanded understanding of miRNA-mediated post-transcriptional regulation in early mammalian development.
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MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA ends...
MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA ends...
Cleavage and Blastulation
After a large-single-celled zygote is produced via fertilization, the process of cleavage occurs while zygotes travel through the uterine tube. Cleavage is a mitotic cell division that does not result in growth. With each round of successive cell division, daughter cells get increasingly smaller.

