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Updated: May 14, 2026

Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants
Published on: February 21, 2015
No association between general cognitive ability and rare copy number variation
Allan F McRae1, Margaret J Wright, Narelle K Hansell
1University of Queensland Diamantina Institute, Brisbane, QLD, Australia. a.mcrae@uq.edu.au
Rare copy-number variations (CNVs) do not appear to influence general cognitive ability (IQ) in individuals. This study found no correlation between CNV burden and IQ scores in a large sample group.
Area of Science:
- Genetics
- Neuroscience
- Cognitive Science
Background:
- Rare copy-number variations (CNVs) are increasingly linked to neuropsychiatric disorders.
- The impact of rare CNVs on normal cognitive variation is not well understood.
Purpose of the Study:
- To investigate the association between rare CNVs and general cognitive ability (IQ).
- To determine if CNV burden affects cognitive variation within the normal phenotypic range.
Main Methods:
- Analysis of rare CNVs (>20 KB, frequency <5%) in 800 individuals (mean age 16.5).
- Utilized Illumina 610K SNP genotyping array data and QuantiSNP software for CNV calling.
- Assessed CNV burden using total length, number, and average length of deletions and duplications.
Main Results:
- No significant correlation was found between any CNV burden measures (total length, number, average length) and IQ scores.
- Comparing individuals in the top and bottom 10% for IQ revealed no association with CNV burden.
- Genome-wide and individual CNV position analyses showed no link to general cognitive ability.
Conclusions:
- Rare CNVs do not appear to be a significant factor in the variation of general cognitive ability in the studied population.
- Further research may be needed to explore the role of CNVs in specific cognitive domains or different populations.
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