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Updated: May 13, 2026

A Protocol for Analyzing Hepatitis C Virus Replication
Published on: June 26, 2014
Modulation of mitogen-activated protein kinase-activated protein kinase 3 by hepatitis C virus core protein
Huong T T Ngo1, Long V Pham, Jong-Wook Kim
1National Research Laboratory of Hepatitis C Virus and Ilsong Institute of Life Science, Hallym University, Anyang, South Korea.
Insights
Hepatitis C virus (HCV) propagation relies on host proteins. Researchers found that mitogen-activated protein kinase-activated protein kinase 3 (MAPKAPK3) interacts with HCV core protein, enhancing viral translation and infectivity.
Area of Science:
- Virology
- Molecular Biology
- Cellular Biology
Background:
- Hepatitis C virus (HCV) requires host cellular proteins for replication.
- Identifying these host factors is crucial for understanding viral propagation and developing antiviral strategies.
Purpose of the Study:
- To identify cellular proteins interacting with the HCV core protein.
- To characterize the role of identified host factors in HCV propagation.
Main Methods:
- Protein microarray assays were used to screen for HCV core-interacting partners from approximately 9,000 host proteins.
- In vitro pulldown and coimmunoprecipitation assays confirmed the interaction between HCV core and MAPKAPK3.
- MAPKAPK3 expression levels were analyzed in HCV-infected cells, and its function was assessed by gene silencing.
Main Results:
- Approximately 100 host proteins were identified as potential HCV core-interacting partners, with MAPKAPK3 selected for further study.
- HCV core protein binds to MAPKAPK3 via specific amino acid residues.
- MAPKAPK3 levels were elevated in HCV-infected cells, and its silencing reduced viral protein and infectivity.
- MAPKAPK3 enhances HCV IRES-mediated translation, an activity further boosted by the HCV core protein.
Conclusions:
- MAPKAPK3 is a host factor that interacts with the HCV core protein.
- MAPKAPK3 facilitates HCV propagation by enhancing viral translation and infectivity.
- HCV core protein may modulate MAPKAPK3 activity to promote viral replication.
Abstract:
Hepatitis C virus (HCV) is highly dependent on cellular proteins for its own propagation. In order to identify the cellular factors involved in HCV propagation, we performed protein microarray assays using the HCV core protein as a probe. Of ~9,000 host proteins immobilized in a microarray, approximately 100 cellular proteins were identified as HCV core-interacting partners. Of these candidates, mitogen-activated protein kinase-activated protein kinase 3 (MAPKAPK3) was selected for further characterization. MAPKAPK3 is a serine/threonine protein kinase that is activated by stress and growth inducers. Binding of HCV core to MAPKAPK3 was confirmed by in vitro pulldown assay and further verified by coimmunoprecipitation assay. HCV core protein interacted with MAPKAPK3 through amino acid residues 41 to 75 of core and the N-terminal half of kinase domain of MAPKAPK3. In addition, both RNA and protein levels of MAPKAPK3 were elevated in both HCV subgenomic replicon cells and cell culture-derived HCV (HCVcc)-infected cells. Silencing of MAPKAPK3 expression resulted in decreases in both protein and HCV infectivity levels but not in the intracellular HCV RNA level. We showed that MAPKAPK3 increased HCV IRES-mediated translation and MAPKAPK3-dependent HCV IRES activity was further increased by core protein. These data suggest that HCV core may modulate MAPKAPK3 to facilitate its own propagation.
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