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Updated: May 13, 2026

A Protocol for Analyzing Hepatitis C Virus Replication
Published on: June 26, 2014
Ca(2+) /S100 proteins regulate HCV virus NS5A-FKBP8/FKBP38 interaction and HCV virus RNA replication
Joji Tani1, Seiko Shimamoto, Kyoko Mori
1Department of Gastroenterology and Neurology, Kagawa University Faculty of Medicine, Kagawa, Japan.
Background & Aim:
FKBP8/FKBP38 is a unique FK506-binding protein with a C-terminal membrane anchor and localizes at the outer membranes of mitochondria and the endoplasmic reticulum. Similar to some immunophilins, such as FKBP51, FKBP52 and Cyclophilin 40, FKBP8/FKBP38 contain a putative Calmodulin-binding domain and a tetratricopeptide-repeat (TPR) domain for the binding of Hsp90. Both Hsp90 and the non-structural protein 5A (NS5A) of the hepatitis C virus (HCV) interact specifically with FKBP8/FKBP38 through its TPR domain, and the ternary complex formation plays a critical role in HCV RNA replication. The goal of this study is to evaluate that the host factor inhibits the ternary complex formation and the replication of HCV in vitro and in vivo.
Methods:
S100 proteins, FKBP38, FKBP8, HCV NS5A, Hsp90, and calmodulin were expressed in E.coli and purified. In vitro binding studies were performed by GST pull-down, S-tag pull-down and surface plasmon resonance analyses. The effect of S100 proteins on HCV replication was analysed by Western blotting using an HCV NS3 antibody following transfection of S100 proteins into the HCV replicon harbouring cell line (sO cells).
Results:
In vitro binding studies showed that S100A1, S100A2, S100A6, S100B and S100P directly interacted with FKBP8/FKBP38 in a Ca(2+) -dependent manner and inhibited the FKBP8/FKBP38-Hsp90 and FKBP8/FKBP38-NS5A interactions. Furthermore, overexpression of S100A1, S100A2 and S100A6 in sO cells resulted in the efficient inhibition of HCV replication.
Conclusion:
The association of the S100 proteins with FKBP8/FKBP38 provides a novel Ca(2+) -dependent regulatory role in HCV replication through the NS5A-host protein interaction.
Insights
S100 proteins bind FKBP8/FKBP38, inhibiting hepatitis C virus (HCV) replication by disrupting the FKBP8/FKBP38-NS5A interaction. This calcium-dependent mechanism offers a new target for antiviral therapies.
Area of Science:
- Virology
- Molecular Biology
- Biochemistry
Background:
- FKBP8/FKBP38 is an FK506-binding protein localizing to mitochondrial and ER outer membranes.
- It possesses a Calmodulin-binding domain and a tetratricopeptide-repeat (TPR) domain, interacting with Hsp90 and Hepatitis C Virus (HCV) NS5A.
- This interaction is crucial for HCV RNA replication.
Purpose of the Study:
- To investigate the role of S100 proteins as host factors in regulating the FKBP8/FKBP38-mediated HCV replication complex.
- To evaluate the inhibitory effect of S100 proteins on the formation of the ternary complex and HCV replication in vitro and in vivo.
Main Methods:
- Recombinant expression and purification of S100 proteins, FKBP38, FKBP8, HCV NS5A, Hsp90, and calmodulin.
- In vitro binding assays including GST pull-down, S-tag pull-down, and surface plasmon resonance.
- Analysis of HCV replication inhibition by Western blotting in an HCV replicon cell line following S100 protein transfection.
Main Results:
- S100A1, S100A2, S100A6, S100B, and S100P directly interacted with FKBP8/FKBP38 in a calcium-dependent manner.
- These S100 proteins inhibited the interactions between FKBP8/FKBP38 with Hsp90 and NS5A.
- Overexpression of S100A1, S100A2, and S100A6 significantly inhibited HCV replication in cultured cells.
Conclusions:
- S100 proteins associate with FKBP8/FKBP38, modulating HCV replication.
- This interaction reveals a novel calcium-dependent regulatory mechanism in HCV replication mediated by the NS5A-host protein interaction.
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