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Methods to Classify Cytoplasmic Foci as Mammalian Stress Granules
Published on: May 12, 2017
MDA5 localizes to stress granules, but this localization is not required for the induction of type I interferon
Martijn A Langereis1, Qian Feng, Frank J van Kuppeveld
1Department of Medical Microbiology, Radboud University Nijmegen Medical Centre, Nijmegen Centre for Molecular Life Sciences & Nijmegen Institute for Infection, Inflammation and Immunology, Nijmegen, The Netherlands.
Abstract:
Virus infection can initiate a type I interferon (IFN-α/β) response via activation of the cytosolic RNA sensors retinoic acid-inducible gene-I (RIG-I) and melanoma differentiation-associated gene 5 (MDA5). Furthermore, it can activate kinases that phosphorylate eukaryotic translation initiation factor 2α (eIF2α), which leads to inhibition of (viral) protein translation and formation of stress granules (SG). Most viruses have evolved mechanisms to suppress these cellular responses. Here, we show that a mutant mengovirus expressing an inactive leader (L) protein, which we have previously shown to be unable to suppress IFN-α/β, triggered SG formation in a protein kinase R (PKR)-dependent manner. Furthermore, we show that infection of cells that are defective in SG formation yielded higher viral RNA levels, suggesting that SG formation acts as an antiviral defense mechanism. Since the induction of both IFN-α/β and SG is suppressed by mengovirus L, we set out to investigate a potential link between these pathways. We observed that MDA5, the intracellular RNA sensor that recognizes picornaviruses, localized to SG. However, activation of the MDA5 signaling pathway did not trigger and was not required for SG formation. Moreover, cells that were unable to form SG-by protein kinase R (PKR) depletion, using cells expressing a nonphosphorylatable eIF2α protein, or by drug treatment that inhibits SG formation-displayed a normal IFN-α/β response. Thus, although MDA5 localizes to SG, this localization seems to be dispensable for induction of the IFN-α/β pathway.
Insights
Virus infection triggers cellular antiviral defenses like stress granule (SG) formation, which limits viral RNA replication. This study reveals SG formation acts as a crucial antiviral mechanism against mengovirus.
Area of Science:
- Virology
- Immunology
- Cell Biology
Background:
- Virus infection activates type I interferon (IFN-α/β) and stress granule (SG) formation via RNA sensors and kinases.
- Viruses often suppress these innate immune responses for replication.
- Mengovirus leader (L) protein suppresses IFN-α/β, but its effect on SG is unknown.
Purpose of the Study:
- Investigate the role of SG formation in antiviral defense.
- Determine the link between IFN-α/β induction and SG formation during mengovirus infection.
- Clarify the function of MDA5 localization to SG.
Main Methods:
- Infection of cells with wild-type and mutant mengovirus (inactive L protein).
- Assessment of IFN-α/β response and SG formation.
- Utilized PKR depletion, nonphosphorylatable eIF2α, and drug treatment to inhibit SG formation.
- Investigated MDA5 localization and signaling.
Main Results:
- Mutant mengovirus lacking functional L protein induced SG formation dependent on protein kinase R (PKR).
- Cells defective in SG formation showed increased viral RNA levels, indicating SG's antiviral role.
- MDA5 localized to SG, but its activation was not required for SG formation, nor did SG formation require MDA5 signaling.
- Inhibition of SG formation did not impair the IFN-α/β response.
Conclusions:
- SG formation is an antiviral defense mechanism limiting viral RNA replication.
- MDA5 localization to SG is dispensable for IFN-α/β induction.
- Mengovirus L protein suppresses both IFN-α/β and SG formation, highlighting their coordinated roles in antiviral immunity.

