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Intramolecular pnicogen interactions in PHF-(CH2)(n)-PHF (n=2-6) systems
Goar Sánchez-Sanz1, Ibon Alkorta, Cristina Trujillo
1Institute of Organic Chemistry and Biochemistry, Gilead Sciences Research Center & IOCB, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Praha 6, Czech Republic. goar@iqm.csic.es
This study computationally investigates intramolecular pnicogen bonds in PHF-(CH2)n-PHF systems. Closed conformations are often more stable and exhibit partial covalent character, with P-P distances correlating to P atom shielding.
Area of Science:
- Computational Chemistry
- Supramolecular Chemistry
- Organic Chemistry
Background:
- Intramolecular pnicogen bonds are crucial in molecular recognition and crystal engineering.
- Understanding these interactions requires detailed computational analysis of their energetic and electronic properties.
Purpose of the Study:
- To computationally investigate the intramolecular pnicogen bond in PHF-(CH2)n-PHF systems.
- To compare the stability and characteristics of closed versus extended conformations.
- To analyze the nature of the P-P interaction and its relationship with chemical shielding.
Main Methods:
- Density Functional Theory (DFT) calculations were employed.
- Isodesmic reactions were used to calculate interaction energies.
- Atoms in Molecules (AIM) and Electron Localization Function (ELF) analyses were performed.
- Cambridge Crystallographic Database search for solid-state evidence.
Main Results:
- Closed conformations were found to be more stable than extended ones in several cases.
- Interaction energies ranged from -3.4 to -26.0 kJ/mol, indicating significant pnicogen bonding.
- AIM and ELF analyses revealed partial covalent character in the P-P interaction.
- An exponential relationship was observed between P atom chemical shielding and P-P distance.
Conclusions:
- Intramolecular pnicogen bonds in PHF-(CH2)n-PHF systems are energetically favorable and possess partial covalent character.
- Conformational preferences significantly influence the strength and nature of these interactions.
- The findings provide insights into the factors governing pnicogen bond formation and strength.
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