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Updated: May 12, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Comparison of Enterococcus faecium and Enterococcus faecalis Strains isolated from water and clinical samples:
Gonzalo Castillo-Rojas1, Marisa Mazari-Hiríart, Sergio Ponce de León
1Programa de Inmunología Molecular Microbiana, Departamento de Microbiología y Parasitología, Facultad de Medicina, Universidad Nacional Autónoma de México, México City, México.
Abstract:
Enterococci are part of the normal intestinal flora in a large number of mammals, and these microbes are currently used as indicators of fecal contamination in water and food for human consumption. These organisms are considered one of the primary causes of nosocomial and environmental infections due to their ability to survive in the environment and to their intrinsic resistance to antimicrobials. The aims of this study were to determine the biochemical patterns and antimicrobial susceptibilities of Enterococcus faecalis and E. faecium isolates from clinical samples and from water (groundwater, water from the Xochimilco wetland, and treated water from the Mexico City Metropolitan Area) and to determine the genetic relationships among these isolates. A total of 121 enterococcus strains were studied; 31 and 90 strains were isolated from clinical samples and water (groundwater, water from the Xochimilco wetland, and water for agricultural irrigation), respectively. Identification to the species level was performed using a multiplex PCR assay, and antimicrobial profiles were obtained using a commercial kit. Twenty-eight strains were analyzed by pulsed-field gel electrophoresis (PFGE). E. faecium strains isolated from water showed an atypical biochemical pattern. The clinical isolates showed higher resistance to antibiotics than those from water. Both the enterococci isolated from humans, and those isolated from water showed high genetic diversity according to the PFGE analysis, although some strains seemed to be closely related. In conclusion, enterococci isolated from humans and water are genetically different. However, water represents a potential route of transmission to the community and a source of antimicrobial resistance genes that may be readily transmitted to other, different bacterial species.
Insights
Enterococci from human clinical samples and water sources exhibit distinct genetic profiles. However, water serves as a potential reservoir for antimicrobial resistance genes, posing a public health risk.
Area of Science:
- Microbiology
- Environmental Science
- Infectious Diseases
Background:
- Enterococci are common gut bacteria and indicators of fecal contamination.
- They cause hospital-acquired infections due to environmental survival and antimicrobial resistance.
- Understanding enterococci from clinical and environmental sources is crucial for public health.
Purpose of the Study:
- To compare biochemical profiles and antimicrobial resistance of Enterococcus faecalis and E. faecium from clinical and water samples.
- To analyze genetic relationships among these enterococci isolates.
- To assess water as a potential transmission route for resistant enterococci.
Main Methods:
- Multiplex PCR for species identification.
- Commercial kits for antimicrobial susceptibility testing.
- Pulsed-field gel electrophoresis (PFGE) for genetic relatedness analysis.
Main Results:
- Enterococci from water showed atypical biochemical patterns compared to clinical isolates.
- Clinical enterococci isolates exhibited higher antibiotic resistance than water isolates.
- Both human and water enterococci displayed significant genetic diversity, with some related strains identified.
Conclusions:
- Enterococci from human clinical samples and water sources are genetically distinct.
- Water environments act as a potential transmission pathway for enterococci in the community.
- Water can be a source of antimicrobial resistance genes transferable to other bacterial species.
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