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Updated: May 12, 2026

A Method for Screening and Validation of Resistant Mutations Against Kinase Inhibitors
Published on: December 7, 2014
Are two better than one? A novel double-mutant KIT in GIST that responds to Imatinib
Elena Conca1, Claudia Miranda, Valentina Dal Col
1Laboratory of Molecular Pathology, Department of Pathology, Fondazione IRCCS Istituto Nazionale dei Tumori, Milano, Via Venezian 1, 20133 Milan, Italy.
Abstract:
Gastrointestinal stromal tumors carry in about 85% of the cases activating mutations in KIT gene. Generally only one KIT mutation is found in primary tumors and the majority of mutations affecting KIT exon 11 is sensitive to Imatinib. We report upon a GIST case harboring a double-mutant KIT gene at exon 11, which expresses a receptor bearing the known activating W557G mutation and a newly discovered missense Y578C alteration. The relative affinities for ATP and Imatinib of each single (W557G, Y578C) and double (W557G/Y578C) mutant KITs were predicted by in silico studies (computer-based molecular simulations), and compared with those obtained for known Imatinib sensitive and resistant KIT mutants. In parallel, biochemical analysis of the single and double KIT mutants expressed in mammalian cells was performed. Both the in-silico/in-vitro investigations showed constitutive activation and sensitivity to Imatinib of the yet mentioned Y578C mutation as well as of the double mutant, providing evidence that the concomitant presence of the W557G and Y578C mutations does not affect Imatinib response compare to the single mutations, in line with what observed in Imatinib treated patient.
Insights
Gastrointestinal stromal tumors (GIST) often have KIT gene mutations. This study found a double-mutant KIT gene (W557G/Y578C) in a GIST case, showing it remains sensitive to Imatinib treatment.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Gastrointestinal stromal tumors (GIST) are primarily driven by activating mutations in the KIT proto-oncogene.
- KIT exon 11 mutations are common in GIST and typically confer sensitivity to Imatinib therapy.
- The presence of multiple KIT mutations in a single tumor is rare.
Observation:
- A GIST case presented with a rare double mutation in the KIT gene's exon 11: W557G and a novel Y578C missense alteration.
- In silico molecular simulations and in vitro biochemical analyses were conducted on single (W557G, Y578C) and double (W557G/Y578C) KIT mutants.
- These studies compared mutant KIT affinities for ATP and Imatinib against known sensitive and resistant mutants.
Findings:
- Both in silico and in vitro studies demonstrated constitutive activation of the Y578C single mutant and the W557G/Y578C double mutant KIT.
- The Y578C mutation and the double W557G/Y578C mutation exhibited sensitivity to Imatinib.
- The combined W557G and Y578C mutations did not alter Imatinib sensitivity compared to single mutations, aligning with clinical observations.
Implications:
- This research provides molecular insights into the behavior of complex KIT mutations in GIST.
- The findings suggest that certain double KIT mutations may not necessarily lead to Imatinib resistance.
- Understanding these complex mutations is crucial for predicting treatment response and optimizing therapeutic strategies for GIST patients.
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