Poly(ADP-ribose) polymerase is a substrate recognized by two metacaspases of Podospora anserina

Ingmar Strobel1, Heinz D Osiewacz

  • 1Department of Biosciences, Institute of Molecular Biosciences and Cluster of Excellence Macromolecular Complexes, Goethe University Frankfurt, Frankfurt am Main, Germany.

Eukaryotic Cell
|April 16, 2013
PubMed

Insights

The fungal metacaspases PaMCA1 and PaMCA2 are arginine-specific proteases that degrade poly(ADP-ribose) polymerase (PaPARP), linking programmed cell death and DNA maintenance in aging.

Area of Science:

  • Molecular Biology
  • Aging Research
  • Fungal Genetics

Background:

  • Podospora anserina metacaspases (PaMCA1, PaMCA2) are implicated in programmed cell death (PCD) and lifespan control.
  • Understanding the specific targets and functions of these metacaspases is crucial for elucidating aging pathways.

Purpose of the Study:

  • To further characterize the enzymatic activity and substrates of PaMCA1 and PaMCA2.
  • To investigate the in vivo role of PaMCA1 in the degradation of its potential substrate, PaPARP.

Main Methods:

  • Heterologous overexpression and refolding of PaMCA1 and PaMCA2 in E. coli.
  • Biochemical assays to determine enzymatic activity, substrate specificity, and calcium dependence.
  • In vitro incubation with recombinant poly(ADP-ribose) polymerase (PARP).
  • Analysis of double mutants (PaParp overexpression with PaMca1 manipulation) to assess in vivo PaPARP degradation.

Main Results:

  • Refolded PaMCA1 and PaMCA2 exhibit calcium-dependent, arginine-specific protease activity and self-maturation.
  • Poly(ADP-ribose) polymerase (PARP) was identified as a substrate for both PaMCA1 and PaMCA2.
  • In vivo experiments confirmed PaMCA1-mediated degradation of PaPARP.

Conclusions:

  • The substrate profiles of fungal metacaspases and mammalian caspases show overlap, with PARP being a common target.
  • These findings establish a link between programmed cell death, DNA maintenance (via PARP), and aging control in P. anserina.

Related Concept Videos

Translesion DNA Polymerases02:10

Translesion DNA Polymerases

Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
The Replisome03:01

The Replisome

DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...