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Related Concept Videos

Cytoplasm01:16

Cytoplasm

The cytoplasm consists of organelles and a framework of protein scaffolds called the cytoskeleton suspended in an aqueous solution, the cytosol. The cytosol is a rich broth of water, ions, salts, and various organic molecules.
Protein Folding and Misfolding
The cytoplasm is the location for several cellular processes, including protein synthesis and folding. The aqueous nature of the cytosol promotes protein folding such that the hydrophobic amino acid side chains are buried in the protein...
Cytoplasm01:24

Cytoplasm

The cytoplasm consists of organelles and a framework of protein scaffolds called the cytoskeleton suspended in an aqueous solution, the cytosol. The cytosol is a rich broth of water, ions, salts, and various organic molecules.
Protein Folding and Misfolding
The cytoplasm is the location for several cellular processes, including protein synthesis and folding. The aqueous nature of the cytosol promotes protein folding such that the hydrophobic amino acid side chains are buried in the protein...
Cytoplasm01:24

Cytoplasm

The cytoplasm consists of organelles and a framework of protein scaffolds called the cytoskeleton suspended in an aqueous solution, the cytosol. The cytosol is a rich broth of water, ions, salts, and various organic molecules.
Protein Folding and Misfolding
The cytoplasm is the location for several cellular processes, including protein synthesis and folding. The aqueous nature of the cytosol promotes protein folding such that the hydrophobic amino acid side chains are buried in the protein...
Studying the Cytoskeleton01:17

Studying the Cytoskeleton

The cytoskeletal architecture can be studied using different microscopic and biochemical techniques. Electron microscopy was instrumental in discovering the cytoskeletal architecture around the 1960s, which allowed obtaining structural information at a high-resolution level. However, the sample preparation procedure often limits this ability in biological samples. Several protocols have been developed over the years to optimize sample preparation. In one of the protocols known as rotary...
Introduction to Cytoskeleton01:33

Introduction to Cytoskeleton

Overview of the Cytoskeleton
The cytoskeleton is a network of protein filaments present within the cell, having three distinct filaments ̶   microfilaments, microtubules, and intermediate filaments. Each has characteristic features that distinguish them, including the dynamics of their assembly and disassembly, mechanical properties, polarity, and the type of molecular motors associated with them. Earlier, they were thought to be present only in eukaryotic cells; however, their homologs were...
Introduction to the Cytoskeleton01:33

Introduction to the Cytoskeleton

Overview of the Cytoskeleton
The cytoskeleton is a network of protein filaments present within the cell, having three distinct filaments ̶   microfilaments, microtubules, and intermediate filaments. Each has characteristic features that distinguish them, including the dynamics of their assembly and disassembly, mechanical properties, polarity, and the type of molecular motors associated with them. Earlier, they were thought to be present only in eukaryotic cells; however, their homologs were...

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Related Experiment Video

Updated: May 12, 2026

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
05:12

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data

Published on: January 16, 2019

Cytoscape app store.

Samad Lotia1, Jason Montojo, Yue Dong

  • 1Gladstone Institutes, San Francisco, CA 94158, USA.

Bioinformatics (Oxford, England)
|April 19, 2013
PubMed
Summary
This summary is machine-generated.

Cytoscape, a biological network tool, now has an App Store. This platform helps researchers find and install valuable apps to extend Cytoscape functionality for network analysis.

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CorrelationCalculator and Filigree: Tools for Data-Driven Network Analysis of Metabolomics Data
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CorrelationCalculator and Filigree: Tools for Data-Driven Network Analysis of Metabolomics Data

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Last Updated: May 12, 2026

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
05:12

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data

Published on: January 16, 2019

CorrelationCalculator and Filigree: Tools for Data-Driven Network Analysis of Metabolomics Data
07:11

CorrelationCalculator and Filigree: Tools for Data-Driven Network Analysis of Metabolomics Data

Published on: November 10, 2023

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Systems Biology

Background:

  • Cytoscape is a widely used open-source software platform.
  • Biological network visualization and analysis are critical research areas.
  • Extensibility through independent applications enhances software utility.

Purpose of the Study:

  • To introduce the Cytoscape App Store.
  • To facilitate the discovery and installation of Cytoscape applications.
  • To promote the visibility of Cytoscape apps and their developers.

Main Methods:

  • Development and launch of a dedicated online platform (Cytoscape App Store).
  • Categorization and highlighting of features provided by various Cytoscape apps.
  • Implementation of a system for app discovery and installation by researchers.

Main Results:

  • A centralized hub for Cytoscape applications is now available.
  • Researchers can easily find and install apps tailored to their specific analysis needs.
  • App developers have a platform to showcase their contributions to the Cytoscape ecosystem.

Conclusions:

  • The Cytoscape App Store enhances the Cytoscape ecosystem by improving app accessibility.
  • It supports researchers in leveraging a broader range of tools for biological network analysis.
  • The store serves as a vital resource for both Cytoscape users and developers.