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Updated: May 12, 2026

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)
Published on: November 4, 2016
Molecular characterization of endocarditis-associated Staphylococcus aureus
Cara Nethercott1, Amanda N Mabbett, Makrina Totsika
1School of Chemistry and Molecular Biosciences and Australian Infectious Diseases Research Centre, The University of Queensland, Brisbane, QLD, Australia.
Abstract:
Infective endocarditis (IE) is a life-threatening infection of the heart endothelium and valves. Staphylococcus aureus is a predominant cause of severe IE and is frequently associated with infections in health care settings and device-related infections. Multilocus sequence typing (MLST), spa typing, and virulence gene microarrays are frequently used to classify S. aureus clinical isolates. This study examined the utility of these typing tools to investigate S. aureus epidemiology associated with IE. Ninety-seven S. aureus isolates were collected from patients diagnosed with (i) IE, (ii) bloodstream infection related to medical devices, (iii) bloodstream infection not related to medical devices, and (iv) skin or soft-tissue infections. The MLST clonal complex (CC) for each isolate was determined and compared to the CCs of members of the S. aureus population by eBURST analysis. The spa type of all isolates was also determined. A null model was used to determine correlations of IE with CC and spa type. DNA microarray analysis was performed, and a permutational analysis of multivariate variance (PERMANOVA) and principal coordinates analysis were conducted to identify genotypic differences between IE and non-IE strains. CC12, CC20, and spa type t160 were significantly associated with IE S. aureus. A subset of virulence-associated genes and alleles, including genes encoding staphylococcal superantigen-like proteins, fibrinogen-binding protein, and a leukocidin subunit, also significantly correlated with IE isolates. MLST, spa typing, and microarray analysis are promising tools for monitoring S. aureus epidemiology associated with IE. Further research to determine a role for the S. aureus IE-associated virulence genes identified in this study is warranted.
Insights
Staphylococcus aureus strains linked to infective endocarditis (IE) were identified using multilocus sequence typing (MLST) and spa typing. Specific genetic markers and virulence genes were associated with IE, aiding epidemiological surveillance.
Area of Science:
- Infectious Diseases
- Microbiology
- Genetics
Background:
- Infective endocarditis (IE) is a severe heart infection often caused by Staphylococcus aureus.
- Staphylococcus aureus is a common cause of healthcare-associated and device-related infections.
Purpose of the Study:
- To evaluate the effectiveness of multilocus sequence typing (MLST), spa typing, and virulence gene microarrays in understanding Staphylococcus aureus epidemiology in IE.
- To identify specific genetic profiles and virulence factors associated with IE.
Main Methods:
- Collected and analyzed 97 Staphylococcus aureus isolates from patients with IE, bloodstream infections, and skin/soft-tissue infections.
- Utilized MLST, spa typing, eBURST analysis, and DNA microarray analysis to characterize isolates.
- Employed statistical models (null model, PERMANOVA) to identify correlations and genotypic differences.
Main Results:
- Identified specific MLST clonal complexes (CC12, CC20) and spa type (t160) significantly associated with IE.
- Found a subset of virulence genes, including those for staphylococcal superantigen-like proteins and fibrinogen-binding protein, correlated with IE isolates.
- Demonstrated genotypic differences between IE and non-IE Staphylococcus aureus strains.
Conclusions:
- MLST, spa typing, and microarray analysis are valuable tools for monitoring Staphylococcus aureus epidemiology in IE.
- Further research is needed to elucidate the role of identified virulence genes in Staphylococcus aureus IE pathogenesis.
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