Search research articles

ABOUT JoVE

Overview Leadership Blog JoVE Help Center

AUTHORS

Publishing Process Editorial Board Scope & Policies Peer Review FAQ Submit

LIBRARIANS

Testimonials Subscriptions Access Resources Library Advisory Board FAQ

RESEARCH

JoVE Journal Methods Collections JoVE Encyclopedia of Experiments Archive

EDUCATION

JoVE Core JoVE Business JoVE Science Education JoVE Lab Manual Faculty Resource Center Faculty Site

Terms & Conditions of Use

Related Concept Videos

Pedigree Analysis

Pedigree Analysis

Pedigree Analysis

Pedigree Analysis

Plant Breeding and Biotechnology

Plant Breeding and Biotechnology

Crop cultivation has a long history in human civilization, with records showing the cultivation of cereal plants beginning at around 8000 BC. This early plant breeding was developed primarily to provide a steady supply of food.

Evolutionary Relationships through Genome Comparisons

Evolutionary Relationships through Genome Comparisons

Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...

Protein Networks

Protein Networks

An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...

Protein Networks

Protein Networks

An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by

Same author

The Center for Integrated Molecular Brain Imaging (Cimbi) database.

NeuroImage·2015

Same author

Action and language mechanisms in the brain: data, models and neuroinformatics.

Neuroinformatics·2013

Same author

Endogenous plasma estradiol in healthy men is positively correlated with cerebral cortical serotonin 2A receptor binding.

Psychoneuroendocrinology·2010

Same author

Visualizing data mining results with the brede tools.

Frontiers in neuroinformatics·2009

Same author

Lost in localization: a solution with neuroinformatics 2.0?

NeuroImage·2009

Same author

fMRI neuroinformatics.

IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society·2006

Search research articles

Related Experiment Video

Updated: May 11, 2026

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Published on: August 15, 2019

Brede tools and federating online neuroinformatics databases.

Finn Årup Nielsen¹

¹DTU Compute, Technical University of Denmark, Kongens Lyngby, Denmark, fn@imm.dtu.dk.

Neuroinformatics

|May 14, 2013

Summary

The Brede Database and Brede Wiki promote open science through simple data formats for easy content sharing. This paper explores how these neuroinformatics tools can interconnect with other databases.

Area of Science:

Neuroscience
Bioinformatics
Open Science

Background:

The Brede Database and Brede Wiki are open science neuroinformatics resources.
They prioritize easy and transparent distribution and federation of content.
Simple data formats are employed to facilitate content reuse by other online tools.

Purpose of the Study:

To describe potential interconnections between Brede tools and other databases.
To illustrate how Brede resources can integrate with the broader scientific data landscape.

Main Methods:

Analysis of the architectural design of Brede Database and Brede Wiki.
Identification of data exchange protocols and interoperability standards.
Exploration of potential integration points at various levels (data, application, semantic).

More Related Videos

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo

Published on: May 4, 2018

A Web Tool for Generating High Quality Machine-readable Biological Pathways

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

Related Experiment Videos

Last Updated: May 11, 2026

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Published on: August 15, 2019

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo

Published on: May 4, 2018

A Web Tool for Generating High Quality Machine-readable Biological Pathways

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

Main Results:

Detailed description of different levels of interconnection between Brede tools and external databases.
Demonstration of how simple formats enable content reuse and federation.
Identification of specific pathways for integrating Brede data into other research workflows.

Conclusions:

Brede Database and Brede Wiki are designed for seamless integration within the open science ecosystem.
Interconnections can be established at multiple levels, enhancing data accessibility and utility.
Facilitating federation and reuse of neuroinformatics data is crucial for advancing scientific discovery.