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Updated: May 10, 2026

Electrophoretic Mobility Shift Assay (EMSA) for the Study of RNA-Protein Interactions: The IRE/IRP Example
Published on: December 3, 2014
Posttranscriptional regulation of PER1 underlies the oncogenic function of IREα
Olivier Pluquet1, Nicolas Dejeans, Marion Bouchecareilh
1Inserm U1053, University of Bordeaux, 146 rue Leo Saignat, 33076 Bordeaux Cedex, France.
Abstract:
Growing evidence supports a role for the unfolded protein response (UPR) in carcinogenesis; however, the precise molecular mechanisms underlying this phenomenon remain elusive. Herein, we identified the circadian clock PER1 mRNA as a novel substrate of the endoribonuclease activity of the UPR sensor IRE1α. Analysis of the mechanism shows that IRE1α endoribonuclease activity decreased PER1 mRNA in tumor cells without affecting PER1 gene transcription. Inhibition of IRE1α signaling using either siRNA-mediated silencing or a dominant-negative strategy prevented PER1 mRNA decay, reduced tumorigenesis, and increased survival, features that were reversed upon PER1 silencing. Clinically, patients showing reduced survival have lower levels of PER1 mRNA expression and increased splicing of XBP1, a known IRE-α substrate, thereby pointing toward an increased IRE1α activity in these patients. Hence, we describe a novel mechanism connecting the UPR and circadian clock components in tumor cells, thereby highlighting the importance of this interplay in tumor development.
Insights
The unfolded protein response (UPR) sensor IRE1α degrades PER1 mRNA in cancer cells, promoting tumor growth. Inhibiting IRE1α reduces tumorigenesis and improves survival by stabilizing PER1 mRNA.
Area of Science:
- Molecular Biology
- Cancer Research
- Chronobiology
Background:
- The unfolded protein response (UPR) is implicated in cancer development, but its precise mechanisms are unclear.
- The circadian clock component PER1 mRNA is identified as a novel target.
- The interplay between UPR and circadian rhythms in cancer is an emerging area of investigation.
Purpose of the Study:
- To elucidate the molecular mechanisms linking the unfolded protein response (UPR) and carcinogenesis.
- To identify novel substrates of the UPR sensor IRE1α involved in tumor development.
- To investigate the therapeutic potential of targeting the UPR-circadian clock axis in cancer.
Main Methods:
- Utilized siRNA-mediated silencing and dominant-negative strategies to inhibit IRE1α signaling.
- Quantified PER1 mRNA levels and XBP1 splicing to assess IRE1α activity.
- Correlated molecular findings with patient survival data.
Main Results:
- Identified PER1 mRNA as a direct substrate of IRE1α endoribonuclease activity, leading to its degradation in tumor cells.
- Demonstrated that inhibiting IRE1α prevents PER1 mRNA decay, reduces tumorigenesis, and enhances survival.
- Observed that reduced patient survival correlates with lower PER1 mRNA and increased XBP1 splicing, indicating higher IRE1α activity.
Conclusions:
- Described a novel mechanism where IRE1α-mediated PER1 mRNA decay promotes tumorigenesis.
- Highlighted the critical role of the interplay between UPR and circadian clock components in cancer progression.
- Suggested that targeting IRE1α activity could be a potential therapeutic strategy for cancer treatment.
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