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Updated: May 10, 2026

Growing a Cystic Fibrosis-Relevant Polymicrobial Biofilm to Probe Community Phenotypes
Published on: April 19, 2024
Antimicrobial susceptibility and molecular typing of MRSA in cystic fibrosis
E A Champion1, M B Miller, E B Popowitch
1Division of Pediatric Pulmonology, Department of Pediatrics, University of North Carolina, Chapel Hill, North Carolina.
Objectives:
The prevalence of methicillin-resistant Staphylococcus aureus (MRSA) in cystic fibrosis (CF) patients in the United States is approximately 25%. Little is known about the relative proportion of hospital- versus community-associated strains or the antimicrobial susceptibility of MRSA in different CF centers. We hypothesized that the majority of MRSA isolates obtained from children with CF are those endemic in the hospital and that those associated with community acquisition (SCCmec IV) would be more resistant than typically seen in non-CF MRSA isolates.
Methods:
We studied MRSA strains from seven pediatric CF centers to determine the clonal distribution based on DNA sequencing of the staphylococcal protein A gene (spa typing), the type of staphylococcal chromosomal cassette mec (SCCmec), and the proportion of strains with Panton-Valentine leukocidin (PVL). Antimicrobial susceptibility to systemic and topical antibiotics was compared between different MRSA types.
Results:
We analyzed 277 MRSA isolates from unique patients (mean age 11.15 ± 4.77 years, 55% male). Seventy % of isolates were SCCmec II PVL negative and the remainder SCCmec IV. Overall 17% MRSA strains were PVL positive (all SCCmec IV). Spa typing of 118 isolates showed most of the SCCmec II strains being t002, while SCCmec IV PVL positive isolates were t008, and SCCmec IV PVL negative isolates represented a variety of spa-types. The proportions of SCCmec II strains and spa-types were similar among centers. Overall rates of resistance to trimethoprim-sulfamethoxazole (4%), tetracycline (7%), tigecycline (0.4%), linezolid (0.4%) as well as fosfomycin (0.4%), fusidic acid (3%), and mupirocin (1%) were low. No strains were resistant to vancomycin. SCCmec II strains had higher rates of resistance to ciprofloxacin and clindamycin (P < 0.001) than SCCmec IV strains.
Conclusions:
In this U.S. study, most MRSA isolates in the pediatric CF population were SCCmec II PVL negative. Rates of resistance were low, including to older and orally available antibiotics such as trimethoprim-sulfamethoxazole.
Insights
Most methicillin-resistant Staphylococcus aureus (MRSA) in U.S. pediatric cystic fibrosis (CF) patients are hospital-associated strains (SCCmec II). Antimicrobial resistance rates were low, even for oral antibiotics like trimethoprim-sulfamethoxazole.
Area of Science:
- Microbiology
- Infectious Diseases
- Genetics
Background:
- Methicillin-resistant Staphylococcus aureus (MRSA) is a significant pathogen in cystic fibrosis (CF) patients.
- Understanding the genetic characteristics and antimicrobial susceptibility of MRSA strains in CF populations is crucial for effective treatment.
- The relative proportion of hospital-associated versus community-associated MRSA strains in pediatric CF patients in the U.S. remains unclear.
Purpose of the Study:
- To investigate the clonal distribution, including staphylococcal chromosomal cassette mec (SCCmec) types and Panton-Valentine leukocidin (PVL) presence, of MRSA isolates from pediatric CF patients in the U.S.
- To compare the antimicrobial susceptibility profiles of different MRSA types found in this population.
- To determine if community-associated MRSA strains are more resistant than hospital-associated strains in pediatric CF patients.
Main Methods:
- Analysis of 277 MRSA isolates from seven U.S. pediatric CF centers.
- Staphylococcal protein A gene sequencing (spa typing) for clonal distribution.
- Determination of SCCmec types and PVL presence.
- Antimicrobial susceptibility testing against various systemic and topical antibiotics.
Main Results:
- The majority of MRSA isolates (70%) were SCCmec II, predominantly PVL negative, consistent with hospital-associated strains.
- A smaller proportion (30%) were SCCmec IV, with 17% of all strains being PVL positive (all SCCmec IV).
- Overall antimicrobial resistance rates were low, including to trimethoprim-sulfamethoxazole, tetracycline, tigecycline, linezolid, fosfomycin, fusidic acid, and mupirocin. No vancomycin resistance was observed. SCCmec II strains showed higher resistance to ciprofloxacin and clindamycin compared to SCCmec IV strains.
Conclusions:
- The predominant MRSA strains in U.S. pediatric CF patients are hospital-associated SCCmec II PVL-negative types.
- Antimicrobial resistance rates in this population are generally low, even for older, orally available antibiotics.
- These findings have implications for treatment strategies and infection control in CF centers.
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