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Related Concept Videos

Bacterial Translocation and Protein Secretion01:26

Bacterial Translocation and Protein Secretion

Bacterial protein secretion involves translocation systems to ensure proteins reach their designated locations, including the plasma membrane, periplasm, outer membrane, or the external environment. These translocation systems are vital for bacterial physiology, supporting processes like membrane assembly, enzymatic activity in the periplasm, and interactions with the external environment. The division of labor between Sec and Tat pathways ensures efficiency in handling proteins with diverse...
Amyloid Fibrils03:03

Amyloid Fibrils

Amyloid fibrils are aggregates of misfolded proteins.  Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils. 
Amyloid deposits were observed as early as 1639 in the liver and the spleen.   In 1854, Rudolph Virchow performed iodine staining, normally used to...
Amyloid Fibrils03:03

Amyloid Fibrils

Amyloid fibrils are aggregates of misfolded proteins.  Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils. 
Amyloid deposits were observed as early as 1639 in the liver and the spleen.   In 1854, Rudolph Virchow performed iodine staining, normally used to...
Gram-negative Bacterial Protein Secretion Systems01:17

Gram-negative Bacterial Protein Secretion Systems

Gram-negative bacteria utilize sophisticated protein secretion systems to transport proteins across their double-membrane envelope into the extracellular environment or host cells. Based on their mechanism of action, these systems are classified into one-step and two-step pathways.One-Step Secretion Systems (Types I, III, IV, and VI)One-step secretion systems bypass the periplasm entirely, forming a continuous channel that spans both the inner and outer membranes:Type I Secretion System (T1SS):...
Export of Misfolded Proteins out of the ER01:32

Export of Misfolded Proteins out of the ER

After folding, the ER assesses the quality of secretory and membrane proteins. The correctly folded proteins are cleared by the calnexin cycle for transport to their final destination, while misfolded proteins are held back in the ER lumen. The ER chaperones attempt to unfold and refold the misfolded proteins but sometimes fail to achieve the correct native conformation. Such terminally misfolded proteins are then exported to the cytosol by ER-associated degradation or ERAD pathway for...
Amino Acid Catabolism01:18

Amino Acid Catabolism

Microorganisms rely on proteins as an essential carbon and energy source, particularly in environments with limited polysaccharides or lipids. However, proteins are too large to cross the plasma membrane unaided, necessitating enzymatic degradation. Microbes secrete extracellular proteases and peptidases that hydrolyze proteins into peptides, which can then be transported across the membrane. Once inside the cell, intracellular proteases degrade these peptides into free amino acids, which...

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Related Experiment Video

Updated: May 10, 2026

Rapid Generation of Amyloid from Native Proteins In vitro
05:48

Rapid Generation of Amyloid from Native Proteins In vitro

Published on: December 5, 2013

A bacterial export system for generating extracellular amyloid aggregates.

Viknesh Sivanathan1, Ann Hochschild

  • 1Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA, USA.

Nature Protocols
|June 22, 2013
PubMed
Summary
This summary is machine-generated.

This study introduces the curli-dependent amyloid generator (C-DAG), a bacteria-based system for creating amyloid aggregates. C-DAG simplifies the identification of amyloidogenic proteins and their variants without requiring purification.

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Purification and Aggregation of the Amyloid Precursor Protein Intracellular Domain
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Purification and Aggregation of the Amyloid Precursor Protein Intracellular Domain

Published on: August 28, 2012

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Last Updated: May 10, 2026

Rapid Generation of Amyloid from Native Proteins In vitro
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Published on: December 5, 2013

Fabrication of Amyloid-β-Secreting Alginate Microbeads for Use in Modelling Alzheimer's Disease
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Purification and Aggregation of the Amyloid Precursor Protein Intracellular Domain
10:08

Purification and Aggregation of the Amyloid Precursor Protein Intracellular Domain

Published on: August 28, 2012

Area of Science:

  • Biochemistry
  • Microbiology
  • Molecular Biology

Background:

  • Amyloid aggregates are implicated in various diseases.
  • Studying amyloid formation often requires complex in vitro methods and protein purification.

Purpose of the Study:

  • To present a novel bacteria-based system, the curli-dependent amyloid generator (C-DAG), for producing amyloid aggregates.
  • To offer a simplified method for identifying and characterizing amyloidogenic proteins.

Main Methods:

  • Utilizing Escherichia coli's natural curli amyloid fiber production.
  • Engineering heterologous amyloidogenic proteins with an N-terminal signal sequence for surface export and assembly.
  • Employing a curli export pathway for protein secretion and amyloid fold acquisition.

Main Results:

  • Demonstrated successful generation of amyloid aggregates on the bacterial cell surface.
  • Showcased C-DAG's ability to facilitate amyloid fold acquisition for inherently amyloidogenic proteins.
  • Validated C-DAG as a tool for distinguishing between amyloidogenic and non-amyloidogenic protein variants.

Conclusions:

  • C-DAG provides a cell-based, purification-free alternative to in vitro amyloid aggregation assays.
  • This system offers a straightforward approach for identifying amyloidogenic proteins and their properties.
  • Results can be obtained rapidly, within one week, after vector construction.