Related Experiment Video
Updated: May 10, 2026

10:56
An Unbiased Approach of Sampling TEM Sections in Neuroscience
Published on: April 13, 2019
Counting and measuring ultrastructural features of biological samples
Cold Spring Harbor Protocols
|July 3, 2013
Summary
Stereological techniques using transmission electron microscopy (TEM) require physical sections for quantifying ultrastructural features like neuronal synapses. This method enables accurate estimation of synapse number and size in brain regions.
Area of Science:
- Cell Biology
- Neuroscience
- Microscopy
Background:
- Ultrastructural cellular features require high-resolution imaging.
- Transmission electron microscopy (TEM) offers necessary resolution but has limitations with section depth.
- Virtual sectioning is not feasible with TEM due to section thickness versus focal depth.
Purpose of the Study:
- To describe a stereological method for quantifying ultrastructural features using TEM.
- To address the challenges of virtual sectioning in TEM for stereology.
- To provide a framework for estimating synapse number and size in brain regions.
Main Methods:
- Utilized physically separated ultrathin sections for conventional TEM viewing.
- Employed physical disectors to overcome limitations of virtual sectioning.
- Applied stereological principles to quantify ultrastructural features.
Main Results:
- Demonstrated the feasibility of quantifying neuronal synapses using physical sections and TEM.
- Established a stereological design applicable to various ultrastructural quantification studies.
- Provided a method for estimating synapse number and size in specific brain regions.
Conclusions:
- Physical sectioning and disectors are essential for TEM-based stereology of ultrastructural features.
- The described stereological approach is adaptable for quantifying cellular structures.
- This method enables accurate estimation of neuronal synapse parameters.
Related Concept Videos
Electron Microscope Tomography and Single-particle Reconstruction
Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Fixation and Sectioning
Two basic types of preparation are used to visualize specimens with a light microscope: wet mounts and fixed specimens.
The simplest type of preparation is the wet mount, in which the specimen is placed in a drop of liquid on the slide. A liquid specimen can be directly deposited on the slide using a dropper. Solid specimens, such as skin scraping, can be placed on the slide before adding a drop of liquid to prepare the wet mount. Sometimes the liquid is simply water, but stains are often added...
The simplest type of preparation is the wet mount, in which the specimen is placed in a drop of liquid on the slide. A liquid specimen can be directly deposited on the slide using a dropper. Solid specimens, such as skin scraping, can be placed on the slide before adding a drop of liquid to prepare the wet mount. Sometimes the liquid is simply water, but stains are often added...
Overview of Microscopy Techniques
The early pioneers of microscopy opened a window into the invisible world of microorganisms. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes that leveraged nonvisible light, such as fluorescence microscopy that uses an ultraviolet light source and electron microscopy that uses short-wavelength electron beams. These advances significantly improved magnification, image resolution, and contrast. By comparison, the...
Preparation of Samples for Electron Microscopy
To be visualized by an electron microscope, either transmission or scanning, biological samples need to be fixed (stabilized) so the electron beam does not destroy them and dried thoroughly (desiccated/dehydrated) so the vacuum does not affect them. Fixation needs to be done as quickly as possible because the sample properties will start changing as soon as it is removed from its natural environment. For example, in a tissue sample, the oxygen levels begin decreasing, causing an altered...

