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Related Concept Videos

Labeling DNA Probes03:31

Labeling DNA Probes

DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
IP3/DAG Signaling Pathway01:11

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Membrane lipids such as phosphatidylinositol (PI) are precursors for several membrane-bound and soluble second messengers. Specific kinases phosphorylate PI and produce phosphorylated inositol phospholipids. One such inositol phospholipids are the  phosphatidylinositol-4,5 bisphosphate [PI(4,5)P2], present in the inner half of the lipid bilayer. Upon ligand binding, GPCR stimulates Gq proteins to turn on phospholipase Cꞵ. Activated phospholipase Cꞵ cleaves PI(4,5)P2 and produces two-second...
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Intracellular Signaling Cascades

Once a ligand binds to a receptor, the signal is transmitted through the membrane and into the cytoplasm. The continuation of a signal in this manner is called signal transduction. Signal transduction only occurs with cell-surface receptors, which cannot interact with most components of the cell, such as DNA. Only internal receptors can interact directly with DNA in the nucleus to initiate protein synthesis. When a ligand binds to its receptor, conformational changes occur that affect the...
Activation and Inactivation of G Proteins01:22

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Maxam-Gilbert Sequencing01:05

Maxam-Gilbert Sequencing

In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
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Related Experiment Video

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Stimulation of Cytoplasmic DNA Sensing Pathways In Vitro and In Vivo
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Published on: September 18, 2014

The cGAS-STING pathway for DNA sensing.

T Sam Xiao1, Katherine A Fitzgerald

  • 1Structural Immunobiology Unit, Laboratory of Immunology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.

Molecular Cell
|July 23, 2013
PubMed
Summary

The cyclic GMP-AMP synthase (cGAS) enzyme and its sensor STING are key to cellular DNA detection. New research reveals cGAS structural details for DNA binding and cGAMP synthesis, enhancing innate immunity understanding.

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Area of Science:

  • Immunology
  • Molecular Biology
  • Biochemistry

Background:

  • The cyclic GMP-AMP synthase (cGAS), its product cyclic GMP-AMP (cGAMP), and the cGAMP sensor STING mediate cytoplasmic DNA sensing in mammals.
  • This pathway is crucial for initiating innate immune responses against foreign or self-DNA.

Purpose of the Study:

  • To elucidate the structural basis of DNA recognition by cGAS.
  • To investigate the catalytic mechanisms underlying cGAMP synthesis by cGAS.
  • To characterize the unique structural features of endogenous cGAMP.

Main Methods:

  • X-ray crystallography and cryo-electron microscopy to determine cGAS-DNA complex structures.
  • Biochemical assays to study cGAS enzymatic activity and cGAMP formation.
  • Mass spectrometry to analyze the phosphodiester linkages in cGAMP.

Main Results:

  • Detailed structural insights into how cGAS binds to DNA.
  • Characterization of the catalytic steps involved in cGAMP production.
  • Identification of distinct phosphodiester linkages in endogenous cGAMP compared to microbial analogs.

Conclusions:

  • These findings provide a deeper understanding of the cGAS-STING pathway's molecular mechanisms.
  • The structural and biochemical data offer new perspectives on innate immune sensing of DNA.
  • Understanding these details may inform therapeutic strategies targeting DNA-mediated inflammatory diseases.