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Updated: May 9, 2026

A Method for Screening and Validation of Resistant Mutations Against Kinase Inhibitors
Published on: December 7, 2014
Cracking the molecular origin of intrinsic tyrosine kinase activity through analysis of pathogenic gain-of-function
Huaibin Chen1, Zhifeng Huang, Kaushik Dutta
1Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Abstract:
The basal (ligand-independent) kinase activity of receptor tyrosine kinases (RTKs) promotes trans-phosphorylation on activation loop tyrosines upon ligand-induced receptor dimerization, thus upregulating intrinsic kinase activity and triggering intracellular signaling. To understand the molecular determinants of intrinsic kinase activity, we used X-ray crystallography and NMR spectroscopy to analyze pathogenic FGF receptor mutants with gradations in gain-of-function activity. These structural analyses revealed a "two-state" dynamic equilibrium model whereby the kinase toggles between an "inhibited," structurally rigid ground state and a more dynamic and heterogeneous active state. The pathogenic mutations have different abilities to shift this equilibrium toward the active state. The increase in the fractional population of FGF receptors in the active state correlates with the degree of gain-of-function activity and clinical severity. Our data demonstrate that the fractional population of RTKs in the active state determines intrinsic kinase activity and underscore how a slight increase in the active population of kinases can have grave consequences for human health.
Insights
Pathogenic FGF receptor mutations shift the balance toward an active kinase state, increasing intrinsic activity. This heightened activity correlates with disease severity, highlighting the impact of kinase dynamics on human health.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- Receptor tyrosine kinases (RTKs) possess basal kinase activity, enhanced by ligand-induced dimerization and trans-phosphorylation.
- Understanding the molecular basis of RTK intrinsic activity is crucial for deciphering signaling pathways and disease mechanisms.
Purpose of the Study:
- To investigate the molecular determinants governing the intrinsic kinase activity of FGF receptors.
- To elucidate how pathogenic mutations affect the conformational dynamics and activity of FGF receptors.
Main Methods:
- X-ray crystallography and Nuclear Magnetic Resonance (NMR) spectroscopy were employed.
- Analysis of pathogenic Fibroblast Growth Factor (FGF) receptor mutants with varying gain-of-function potentials.
Main Results:
- A "two-state" dynamic equilibrium model was revealed, with kinases alternating between inhibited and active states.
- Pathogenic mutations differentially modulate this equilibrium, favoring the active state.
- Increased population of FGF receptors in the active state directly correlates with enhanced gain-of-function activity and clinical severity.
Conclusions:
- The fractional population of RTKs in the active state dictates intrinsic kinase activity.
- Even minor shifts toward the active kinase state can lead to severe health consequences.
- This study provides insights into the structural dynamics underlying RTK-mediated diseases.
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