Related Experiment Video
Updated: May 9, 2026

14:32
Deacetylation Assays to Unravel the Interplay between Sirtuins (SIRT2) and Specific Protein-substrates
Published on: February 27, 2016
SIRT6 exhibits nucleosome-dependent deacetylase activity
Reuven Gil1, Shaul Barth, Yariv Kanfi
1The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan 52900, Israel.
Nucleic Acids Research
|July 30, 2013
Summary
Sirtuin 6 (SIRT6) deacetylase activity is nucleosome-dependent. SIRT6 deacetylates histones H3 and H4 only when they are part of nucleosomes, unlike SIRT1, suggesting nucleosome binding activates SIRT6.
Area of Science:
- Biochemistry
- Molecular Biology
- Genetics
Background:
- Sirtuin 6 (SIRT6) is crucial for genome stability, metabolism, and lifespan in mammals.
- Previous research suggests SIRT6 has limited deacetylase activity in vitro.
- Understanding SIRT6's functional conditions is vital for its therapeutic potential.
Purpose of the Study:
- To investigate the specific conditions required for SIRT6 to exhibit significant deacetylase activity.
- To elucidate the role of nucleosomes in regulating SIRT6 function.
- To compare SIRT6's activity with SIRT1 under different substrate conditions.
Main Methods:
- In vitro biochemical assays to assess deacetylase activity.
- Analysis of SIRT6 and SIRT1 interactions with nucleosomes and free histones.
- Histone deacetylase (HDAC) activity assays.
Main Results:
- SIRT6 deacetylates histones H3 and H4 specifically when they are packaged within nucleosomes.
- SIRT6 does not deacetylate free histones.
- SIRT1 displays distinct substrate preferences compared to SIRT6, not being nucleosome-dependent.
Conclusions:
- SIRT6's deacetylase activity is intrinsically dependent on its association with nucleosomes.
- Nucleosome binding appears to be a critical factor in activating SIRT6's enzymatic function.
- These findings offer new insights into the regulation of SIRT6 and its role in cellular processes.
Related Concept Videos
Spreading of Chromatin Modifications
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...
Writers
The writer is an enzyme that can...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Nucleosome Remodeling
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Inheritance of Chromatin Structures
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying DNA...
Chromatin Modification in iPS Cells
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...

