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GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks
Esther Camilo1, Luiz A Bovolenta, Marcio L Acencio
1Department of Physics and Biophysics, Institute of Biosciences, UNESP Univ Estadual Paulista, Botucatu, São Paulo, Brazil and Institute of Basic Science and Health, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil.
Summary:
Network-level visualization of functional data is a key aspect of both analysis and understanding of biological systems. In a continuing effort to create clear and integrated visualizations that facilitate the gathering of novel biological insights despite the overwhelming complexity of data, we present here the GrAph LANdscape VisualizaTion (GALANT), a Cytoscape plugin that builds functional landscapes onto biological networks. By using GALANT, it is possible to project any type of numerical data onto a network to create a smoothed data map resembling the network layout. As a Cytoscape plugin, GALANT is further improved by the functionalities of Cytoscape, the popular bioinformatics package for biological network visualization and data integration.
Availability:
http://www.lbbc.ibb.unesp.br/galant.
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