Related Experiment Video
Updated: May 9, 2026

09:34
Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Survival prediction based on inherited gene variation analysis.
Mine S Cicek1, Matthew J Maurer, Ellen L Goode
1Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, MN, USA.
Methods in Molecular Biology (Clifton, N.J.)
|August 6, 2013
Summary
Inherited genetic variants influence ovarian cancer outcomes. Identifying these survival-associated variants can improve current prognostic tools for ovarian cancer patients.
Area of Science:
- Oncology
- Genetics
- Genomics
Background:
- Ovarian cancer outcomes vary significantly among patients.
- Known prognostic factors include clinical features like age, stage, comorbidities, and surgical debulking.
- A portion of outcome variation in ovarian cancer remains unexplained by current clinical factors.
Purpose of the Study:
- To identify inherited genetic variants associated with survival in ovarian cancer.
- To explore the potential of these variants in enhancing prognostic capabilities for ovarian cancer.
Main Methods:
- This study involved the identification of survival-associated inherited variants in ovarian cancer cases.
- The methods focused on analyzing genetic factors contributing to disease outcome.
Main Results:
- The research successfully identified specific inherited variants linked to ovarian cancer survival.
- These variants represent a novel category of prognostic indicators.
Conclusions:
- Inherited factors play a role in the unexplained variation of ovarian cancer outcomes.
- The identified survival-associated variants offer a new avenue for improving prognostic accuracy in ovarian cancer management.
Related Concept Videos
Genetic Variation
Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles, which...
Genes exist in different versions called alleles, which...
Mutation, Gene Flow, and Genetic Drift
In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
Evolutionary Relationships through Genome Comparisons
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Survival Tree
Survival trees are a non-parametric method used in survival analysis to model the relationship between a set of covariates and the time until an event of interest occurs, often referred to as the "time-to-event" or "survival time." This method is particularly useful when dealing with censored data, where the event has not occurred for some individuals by the end of the study period, or when the exact time of the event is unknown.
Building a Survival Tree
Constructing a survival tree begins...
Building a Survival Tree
Constructing a survival tree begins...
Assumptions of Survival Analysis
Survival models analyze the time until one or more events occur, such as death in biological organisms or failure in mechanical systems. These models are widely used across fields like medicine, biology, engineering, and public health to study time-to-event phenomena. To ensure accurate results, survival analysis relies on key assumptions and careful study design.
Cancer Survival Analysis
Cancer survival analysis focuses on quantifying and interpreting the time from a key starting point, such as diagnosis or the initiation of treatment, to a specific endpoint, such as remission or death. This analysis provides critical insights into treatment effectiveness and factors that influence patient outcomes, helping to shape clinical decisions and guide prognostic evaluations. A cornerstone of oncology research, survival analysis tackles the challenges of skewed, non-normally...

