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Quantitative Metabolomics of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry
Published on: January 5, 2021
Studying Myc's role in metabolism regulation
1Department of Pathology, Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Methods in Molecular Biology (Clifton, N.J.)
|September 6, 2013
Summary
The MYC oncogene controls cell growth by regulating genes for metabolism and ribosome production. Understanding its genomic targets requires complementary metabolic studies, which are detailed here.
Area of Science:
- Oncology
- Molecular Biology
- Metabolic Research
Background:
- The MYC oncogene encodes the Myc transcription factor, a key regulator of cellular processes.
- Myc influences ribosome biogenesis, lipid and nucleic acid synthesis, metabolism, and cell proliferation.
- Genomic studies have mapped Myc binding sites, revealing its role in glucose and glutamine metabolism and mitochondrial biogenesis.
Purpose of the Study:
- To underscore the necessity of integrating genomic and metabolic data for a comprehensive understanding of Myc function.
- To describe methodologies for metabolic studies that complement genomic insights into Myc's regulatory roles.
Main Methods:
- Genomic studies involving global mapping of Myc binding sites in cancer cell lines.
- Metabolic studies utilizing techniques such as oxygen consumption measurement, glucose uptake assays, and (13)C-labeled substrate tracing.
- Analysis of metabolic pathways influenced by Myc.
Main Results:
- Genomic mapping confirms Myc's extensive regulation of genes involved in core cellular functions.
- Myc critically impacts glucose and glutamine metabolism, alongside mitochondrial and ribosomal biogenesis.
- Metabolic studies are essential to contextualize and validate the functional relevance of Myc's genomic targets.
Conclusions:
- The functional significance of Myc's genomic targets is best understood through parallel metabolic investigations.
- A combined genomic and metabolic approach provides a holistic view of Myc's role in cancer.
- The described metabolic methods are crucial for dissecting Myc-driven metabolic reprogramming.
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